miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18068 3' -57.6 NC_004680.1 + 45174 0.66 0.578645
Target:  5'- uGGUCUCG--GCGGCUCuc--GCCGCGa -3'
miRNA:   3'- -CUAGAGCauCGCCGGGuguaCGGCGU- -5'
18068 3' -57.6 NC_004680.1 + 38313 0.66 0.557169
Target:  5'- -uUCUUGUAGcCGGCaCCGCAgGCUgGCGu -3'
miRNA:   3'- cuAGAGCAUC-GCCG-GGUGUaCGG-CGU- -5'
18068 3' -57.6 NC_004680.1 + 23528 0.67 0.546516
Target:  5'- aGUCaCGcgGGCGGCCUgcacgaucaGCGUGCCGUc -3'
miRNA:   3'- cUAGaGCa-UCGCCGGG---------UGUACGGCGu -5'
18068 3' -57.6 NC_004680.1 + 38585 0.67 0.546516
Target:  5'- gGAUC-CGUGGCuGGCCCGguUGgaGCGg -3'
miRNA:   3'- -CUAGaGCAUCG-CCGGGUguACggCGU- -5'
18068 3' -57.6 NC_004680.1 + 11090 0.67 0.504626
Target:  5'- --cUUgGUGGCGGCCCcggcgcccaaGCAgaacGCCGCGg -3'
miRNA:   3'- cuaGAgCAUCGCCGGG----------UGUa---CGGCGU- -5'
18068 3' -57.6 NC_004680.1 + 32396 0.68 0.484202
Target:  5'- cAUUUCGU-GCGGCCguCGUcGCUGCGg -3'
miRNA:   3'- cUAGAGCAuCGCCGGguGUA-CGGCGU- -5'
18068 3' -57.6 NC_004680.1 + 7790 0.68 0.464182
Target:  5'- uGUC-CGUcGCGGCaCCACGguUGUCGCGg -3'
miRNA:   3'- cUAGaGCAuCGCCG-GGUGU--ACGGCGU- -5'
18068 3' -57.6 NC_004680.1 + 25916 0.69 0.406886
Target:  5'- uGGUCUCGccgUGGUGGCggCCGCc-GCCGCAg -3'
miRNA:   3'- -CUAGAGC---AUCGCCG--GGUGuaCGGCGU- -5'
18068 3' -57.6 NC_004680.1 + 50598 0.69 0.37995
Target:  5'- --cCUCGgGGuCGGUCCACA-GCCGCu -3'
miRNA:   3'- cuaGAGCaUC-GCCGGGUGUaCGGCGu -5'
18068 3' -57.6 NC_004680.1 + 33393 0.7 0.362668
Target:  5'- cGAUCUCGgaguGCaGGUCucgCACAUGCUGCGg -3'
miRNA:   3'- -CUAGAGCau--CG-CCGG---GUGUACGGCGU- -5'
18068 3' -57.6 NC_004680.1 + 49957 0.71 0.329771
Target:  5'- cGAUUUCGa---GGCCCACGUcGCCGCc -3'
miRNA:   3'- -CUAGAGCaucgCCGGGUGUA-CGGCGu -5'
18068 3' -57.6 NC_004680.1 + 7671 0.71 0.314167
Target:  5'- cAUCgagCGUGGCGGCCUGCAgGCgGUg -3'
miRNA:   3'- cUAGa--GCAUCGCCGGGUGUaCGgCGu -5'
18068 3' -57.6 NC_004680.1 + 42256 0.72 0.263985
Target:  5'- cGAUCUgCGUGGCGGUCCAaccCAUGCgGg- -3'
miRNA:   3'- -CUAGA-GCAUCGCCGGGU---GUACGgCgu -5'
18068 3' -57.6 NC_004680.1 + 43611 0.73 0.234683
Target:  5'- uGGUCgaaCGUGGCGGCgucgcaaccggugucCCACcUGCCGCGa -3'
miRNA:   3'- -CUAGa--GCAUCGCCG---------------GGUGuACGGCGU- -5'
18068 3' -57.6 NC_004680.1 + 58659 0.73 0.21482
Target:  5'- ---aUUGUGuCGGCCCACGUGUCGCGu -3'
miRNA:   3'- cuagAGCAUcGCCGGGUGUACGGCGU- -5'
18068 3' -57.6 NC_004680.1 + 7538 1.08 0.000666
Target:  5'- cGAUCUCGUAGCGGCCCACAUGCCGCAc -3'
miRNA:   3'- -CUAGAGCAUCGCCGGGUGUACGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.