miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18069 3' -52.3 NC_004680.1 + 47350 0.66 0.88041
Target:  5'- uUGGAUAGGU-GUUGCuuccAAGCUcuUGCCGg -3'
miRNA:   3'- -ACUUGUCCAgUAGCGc---UUCGA--ACGGC- -5'
18069 3' -52.3 NC_004680.1 + 1995 0.66 0.88041
Target:  5'- gUGAGCauauGGGUCAU-GCGggGCggcgugaGCUGa -3'
miRNA:   3'- -ACUUG----UCCAGUAgCGCuuCGaa-----CGGC- -5'
18069 3' -52.3 NC_004680.1 + 54018 0.66 0.872525
Target:  5'- cGggUAGGUCGaaUC-CGAgcAGCUUGCa- -3'
miRNA:   3'- aCuuGUCCAGU--AGcGCU--UCGAACGgc -5'
18069 3' -52.3 NC_004680.1 + 17276 0.66 0.855985
Target:  5'- cGGAUGGGUUugAUCGUGuGGCg-GCCGg -3'
miRNA:   3'- aCUUGUCCAG--UAGCGCuUCGaaCGGC- -5'
18069 3' -52.3 NC_004680.1 + 28939 0.66 0.847345
Target:  5'- cGGGCcGGUgCGuuUCGCGAAGaacaUGCCGg -3'
miRNA:   3'- aCUUGuCCA-GU--AGCGCUUCga--ACGGC- -5'
18069 3' -52.3 NC_004680.1 + 50152 0.67 0.820052
Target:  5'- cGAAgGGGUCucggGUCGCGGucGCaccggGCCGg -3'
miRNA:   3'- aCUUgUCCAG----UAGCGCUu-CGaa---CGGC- -5'
18069 3' -52.3 NC_004680.1 + 59136 0.68 0.780838
Target:  5'- -uGGCAGGUCcaguuGUCGCGGcggaauguGGCUUGuuGc -3'
miRNA:   3'- acUUGUCCAG-----UAGCGCU--------UCGAACggC- -5'
18069 3' -52.3 NC_004680.1 + 28818 0.68 0.780838
Target:  5'- gUGAACAGGUCcagGUCGCGcacGaucUGCCa -3'
miRNA:   3'- -ACUUGUCCAG---UAGCGCuu-Cga-ACGGc -5'
18069 3' -52.3 NC_004680.1 + 31919 0.69 0.739059
Target:  5'- ----gGGGUCgguGUgGCgGAGGCUUGCCGa -3'
miRNA:   3'- acuugUCCAG---UAgCG-CUUCGAACGGC- -5'
18069 3' -52.3 NC_004680.1 + 21247 0.69 0.728303
Target:  5'- cGAuGCAGuGUCGUCGgcCGggGCUggUGUCGg -3'
miRNA:   3'- aCU-UGUC-CAGUAGC--GCuuCGA--ACGGC- -5'
18069 3' -52.3 NC_004680.1 + 26893 0.69 0.706504
Target:  5'- gGGGCAccaccacuugcGGUCAUCGcCGAuGCcggUGCCGa -3'
miRNA:   3'- aCUUGU-----------CCAGUAGC-GCUuCGa--ACGGC- -5'
18069 3' -52.3 NC_004680.1 + 16928 0.73 0.475713
Target:  5'- gUGGACccGUCcccaGUCGCGggGCaggUGCCGg -3'
miRNA:   3'- -ACUUGucCAG----UAGCGCuuCGa--ACGGC- -5'
18069 3' -52.3 NC_004680.1 + 26700 0.74 0.445233
Target:  5'- cGAACAGGUCGccCGCGAAGUccacGCUGu -3'
miRNA:   3'- aCUUGUCCAGUa-GCGCUUCGaa--CGGC- -5'
18069 3' -52.3 NC_004680.1 + 1268 0.74 0.425532
Target:  5'- gGGGCAGGgcagCAUCGaagaGGAuguGCUUGCCGa -3'
miRNA:   3'- aCUUGUCCa---GUAGCg---CUU---CGAACGGC- -5'
18069 3' -52.3 NC_004680.1 + 7872 1.09 0.002013
Target:  5'- aUGAACAGGUCAUCGCGAAGCUUGCCGu -3'
miRNA:   3'- -ACUUGUCCAGUAGCGCUUCGAACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.