miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18069 5' -56.3 NC_004680.1 + 8856 0.66 0.686817
Target:  5'- -cCGGCagGACCAUcucgUUGCCGUCGCGg- -3'
miRNA:   3'- uuGCCG--CUGGUGa---AGUGGCAGUGCgu -5'
18069 5' -56.3 NC_004680.1 + 20291 0.66 0.686817
Target:  5'- gGugGGCGGCaCugUUCGCCcGUUgACGUu -3'
miRNA:   3'- -UugCCGCUG-GugAAGUGG-CAG-UGCGu -5'
18069 5' -56.3 NC_004680.1 + 42781 0.66 0.675978
Target:  5'- cGCGGUucGACUGCacccCACCGUCGcCGCGg -3'
miRNA:   3'- uUGCCG--CUGGUGaa--GUGGCAGU-GCGU- -5'
18069 5' -56.3 NC_004680.1 + 30750 0.66 0.675978
Target:  5'- --gGGCGACgGCUg-GCagGUCGCGCAc -3'
miRNA:   3'- uugCCGCUGgUGAagUGg-CAGUGCGU- -5'
18069 5' -56.3 NC_004680.1 + 8893 0.66 0.665097
Target:  5'- uACGGCGGCCcCUUgACCG-CGC-CGg -3'
miRNA:   3'- uUGCCGCUGGuGAAgUGGCaGUGcGU- -5'
18069 5' -56.3 NC_004680.1 + 40452 0.66 0.643256
Target:  5'- cGGCGuGCGGCUGCUucUCACCGauUCGgGCu -3'
miRNA:   3'- -UUGC-CGCUGGUGA--AGUGGC--AGUgCGu -5'
18069 5' -56.3 NC_004680.1 + 55022 0.66 0.632315
Target:  5'- uGCGGCGcauggcucGCCGCcugaucUCugUGUCACGCc -3'
miRNA:   3'- uUGCCGC--------UGGUGa-----AGugGCAGUGCGu -5'
18069 5' -56.3 NC_004680.1 + 38001 0.66 0.632315
Target:  5'- -uUGGCGACCGUUgaCACCGUUugGUu -3'
miRNA:   3'- uuGCCGCUGGUGAa-GUGGCAGugCGu -5'
18069 5' -56.3 NC_004680.1 + 9681 0.66 0.632315
Target:  5'- -uUGGUGACguUcUCGCCGaUCGCGCGg -3'
miRNA:   3'- uuGCCGCUGguGaAGUGGC-AGUGCGU- -5'
18069 5' -56.3 NC_004680.1 + 42042 0.67 0.610442
Target:  5'- uGCGGCGGCgAgUUCAUgGgCACGUAu -3'
miRNA:   3'- uUGCCGCUGgUgAAGUGgCaGUGCGU- -5'
18069 5' -56.3 NC_004680.1 + 27677 0.67 0.610442
Target:  5'- -gUGG-GACUACUUCACCGa-ACGCGu -3'
miRNA:   3'- uuGCCgCUGGUGAAGUGGCagUGCGU- -5'
18069 5' -56.3 NC_004680.1 + 3612 0.68 0.566988
Target:  5'- cGGCuGCGACCGCUgaACUGagGCGCAg -3'
miRNA:   3'- -UUGcCGCUGGUGAagUGGCagUGCGU- -5'
18069 5' -56.3 NC_004680.1 + 27323 0.68 0.545542
Target:  5'- cAACGGCGucuccuACCACUaCACCaUCuCGCAg -3'
miRNA:   3'- -UUGCCGC------UGGUGAaGUGGcAGuGCGU- -5'
18069 5' -56.3 NC_004680.1 + 23983 0.68 0.513891
Target:  5'- uGCGacGCGGCCGCcUUACCGUCAagcUGCGu -3'
miRNA:   3'- uUGC--CGCUGGUGaAGUGGCAGU---GCGU- -5'
18069 5' -56.3 NC_004680.1 + 26771 0.69 0.503505
Target:  5'- --gGGCGACCugUUCGCgGgUGCGUAg -3'
miRNA:   3'- uugCCGCUGGugAAGUGgCaGUGCGU- -5'
18069 5' -56.3 NC_004680.1 + 23910 0.69 0.493212
Target:  5'- --aGGCGGCCGCgUCGCa--CACGCAu -3'
miRNA:   3'- uugCCGCUGGUGaAGUGgcaGUGCGU- -5'
18069 5' -56.3 NC_004680.1 + 43234 0.69 0.493212
Target:  5'- cGGCGucaGUGACCACUgcUCACCGgCAUGCc -3'
miRNA:   3'- -UUGC---CGCUGGUGA--AGUGGCaGUGCGu -5'
18069 5' -56.3 NC_004680.1 + 7757 0.69 0.453062
Target:  5'- uGACGGUGAaguggUCGCCGuUCGCGCAg -3'
miRNA:   3'- -UUGCCGCUggugaAGUGGC-AGUGCGU- -5'
18069 5' -56.3 NC_004680.1 + 52251 0.7 0.433665
Target:  5'- uGCGGCGAggGCUUCGCgaaGUUGCGCGa -3'
miRNA:   3'- uUGCCGCUggUGAAGUGg--CAGUGCGU- -5'
18069 5' -56.3 NC_004680.1 + 33955 0.7 0.414759
Target:  5'- cAACGGCGGCaacaACggCACC-UCACGCc -3'
miRNA:   3'- -UUGCCGCUGg---UGaaGUGGcAGUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.