Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18070 | 5' | -53.4 | NC_004680.1 | + | 32255 | 0.66 | 0.858749 |
Target: 5'- aGCacGCCGAau----CUUCUCCGUCACu -3' miRNA: 3'- gCG--UGGCUcaugcuGAAGAGGCAGUG- -5' |
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18070 | 5' | -53.4 | NC_004680.1 | + | 22515 | 0.66 | 0.858749 |
Target: 5'- gGUuCCGA-UACGAUcgcCUCCGUCACc -3' miRNA: 3'- gCGuGGCUcAUGCUGaa-GAGGCAGUG- -5' |
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18070 | 5' | -53.4 | NC_004680.1 | + | 52475 | 0.66 | 0.841732 |
Target: 5'- aGCACCG-GUACGGgCUUCUUCccgaGCg -3' miRNA: 3'- gCGUGGCuCAUGCU-GAAGAGGcag-UG- -5' |
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18070 | 5' | -53.4 | NC_004680.1 | + | 4535 | 0.66 | 0.832889 |
Target: 5'- gGCGCUGuGUucCGACguuUCUgCUGUCACa -3' miRNA: 3'- gCGUGGCuCAu-GCUGa--AGA-GGCAGUG- -5' |
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18070 | 5' | -53.4 | NC_004680.1 | + | 49234 | 0.66 | 0.832889 |
Target: 5'- cCGCACgcaGAGcauuuaGCGACcUCgCCGUCGCg -3' miRNA: 3'- -GCGUGg--CUCa-----UGCUGaAGaGGCAGUG- -5' |
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18070 | 5' | -53.4 | NC_004680.1 | + | 49838 | 0.67 | 0.814578 |
Target: 5'- gCGCGuuGAGcGCGuucgCUUCGUCGCa -3' miRNA: 3'- -GCGUggCUCaUGCugaaGAGGCAGUG- -5' |
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18070 | 5' | -53.4 | NC_004680.1 | + | 2841 | 0.67 | 0.80513 |
Target: 5'- aGCACgGAcggGCGaACUUCUgccacCCGUCACc -3' miRNA: 3'- gCGUGgCUca-UGC-UGAAGA-----GGCAGUG- -5' |
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18070 | 5' | -53.4 | NC_004680.1 | + | 8877 | 0.69 | 0.680775 |
Target: 5'- cCGCGCCGGG-ACGGg-UCUCCGcCGg -3' miRNA: 3'- -GCGUGGCUCaUGCUgaAGAGGCaGUg -5' |
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18070 | 5' | -53.4 | NC_004680.1 | + | 8059 | 1.09 | 0.001828 |
Target: 5'- cCGCACCGAGUACGACUUCUCCGUCACc -3' miRNA: 3'- -GCGUGGCUCAUGCUGAAGAGGCAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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