Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18072 | 3' | -56.1 | NC_004680.1 | + | 8442 | 0.68 | 0.592969 |
Target: 5'- cCCGGGCCAcccAUCCACacauagaaguagCCGGgaacCAGGGCGAu -3' miRNA: 3'- -GGUUUGGU---UGGGUG------------GGCC----GUCCUGCU- -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 287 | 0.68 | 0.571568 |
Target: 5'- gCCAca-CAACaCCAUCCGGCAGGucugGCGc -3' miRNA: 3'- -GGUuugGUUG-GGUGGGCCGUCC----UGCu -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 13091 | 0.68 | 0.571568 |
Target: 5'- uCUuAGCCAcuuACCCuCCCGGCAuGACGu -3' miRNA: 3'- -GGuUUGGU---UGGGuGGGCCGUcCUGCu -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 18347 | 0.68 | 0.560935 |
Target: 5'- aCGAACCGgguuugcacGCCagucacCCCGGCAGGAaccCGAu -3' miRNA: 3'- gGUUUGGU---------UGGgu----GGGCCGUCCU---GCU- -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 10909 | 0.69 | 0.550357 |
Target: 5'- -aGGACCAGCCCGa-CGGCgAGGACc- -3' miRNA: 3'- ggUUUGGUUGGGUggGCCG-UCCUGcu -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 1918 | 0.69 | 0.539841 |
Target: 5'- -gGAACCGGCCCGCCCacGCGGcGAucguCGAa -3' miRNA: 3'- ggUUUGGUUGGGUGGGc-CGUC-CU----GCU- -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 38790 | 0.69 | 0.539841 |
Target: 5'- cCCGcGCCGggACCCuCCaaCGGCuGGGACGAa -3' miRNA: 3'- -GGUuUGGU--UGGGuGG--GCCG-UCCUGCU- -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 31156 | 0.69 | 0.529394 |
Target: 5'- gCUGAcCCGACCCACUCGGCAccgucguagcaGACGGa -3' miRNA: 3'- -GGUUuGGUUGGGUGGGCCGUc----------CUGCU- -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 36254 | 0.69 | 0.508732 |
Target: 5'- gCAGACCAGCgguccucgCCGCCCuGCGGGcAUGGg -3' miRNA: 3'- gGUUUGGUUG--------GGUGGGcCGUCC-UGCU- -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 35750 | 0.7 | 0.496499 |
Target: 5'- cCCGAACCAAaagcgucgccgaCCGCCCGcuCAGGACu- -3' miRNA: 3'- -GGUUUGGUUg-----------GGUGGGCc-GUCCUGcu -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 25144 | 0.7 | 0.482397 |
Target: 5'- gCCAGGCCAACgCCACCaccaccuugucgUGGCGcagcggaaaaggugcGGACGGc -3' miRNA: 3'- -GGUUUGGUUG-GGUGG------------GCCGU---------------CCUGCU- -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 47567 | 0.7 | 0.478404 |
Target: 5'- uCCGAgGCCAGCCCAUCCG--AGGACc- -3' miRNA: 3'- -GGUU-UGGUUGGGUGGGCcgUCCUGcu -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 34258 | 0.7 | 0.468492 |
Target: 5'- gCCcuGCCGagggauucACCaucCCCGGCAGGGCGc -3' miRNA: 3'- -GGuuUGGU--------UGGgu-GGGCCGUCCUGCu -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 23564 | 0.71 | 0.429949 |
Target: 5'- cCgGGGCCuGCCC-CUCGGCAGGAUc- -3' miRNA: 3'- -GgUUUGGuUGGGuGGGCCGUCCUGcu -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 34583 | 0.71 | 0.420607 |
Target: 5'- cCCAc-CCAGCUCcCCCGGCugcacguGGGCGAu -3' miRNA: 3'- -GGUuuGGUUGGGuGGGCCGu------CCUGCU- -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 36149 | 0.71 | 0.411389 |
Target: 5'- gCCGGACgCAuCCCauGCCC-GCAGGGCGGc -3' miRNA: 3'- -GGUUUG-GUuGGG--UGGGcCGUCCUGCU- -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 29702 | 0.71 | 0.411389 |
Target: 5'- aCCGGgcACCAACCCaaucacauGCUgGGCAGGuGCGGg -3' miRNA: 3'- -GGUU--UGGUUGGG--------UGGgCCGUCC-UGCU- -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 12899 | 0.72 | 0.384501 |
Target: 5'- gCCAGGuCCAGCCCAa---GCAGGGCGAc -3' miRNA: 3'- -GGUUU-GGUUGGGUgggcCGUCCUGCU- -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 15787 | 0.73 | 0.339126 |
Target: 5'- uUCAAGCCGAUCaucaagcagguuCCCGGCAuGGACGGc -3' miRNA: 3'- -GGUUUGGUUGGgu----------GGGCCGU-CCUGCU- -5' |
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18072 | 3' | -56.1 | NC_004680.1 | + | 8447 | 0.74 | 0.282071 |
Target: 5'- -gGGGCUGgcACCCACCCGGCAGGcACc- -3' miRNA: 3'- ggUUUGGU--UGGGUGGGCCGUCC-UGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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