miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18073 3' -58.1 NC_004680.1 + 33608 0.67 0.521812
Target:  5'- cGGCGAUCCGCACCgcaucugguUCgucgcacaccuggaACGCGGUGuGg -3'
miRNA:   3'- cUUGCUAGGCGUGG---------AG--------------UGCGCCGC-Cg -5'
18073 3' -58.1 NC_004680.1 + 47709 0.67 0.514655
Target:  5'- --uCGAUCUGCucagcccacGCCUCGa-CGGUGGCg -3'
miRNA:   3'- cuuGCUAGGCG---------UGGAGUgcGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 41308 0.67 0.514655
Target:  5'- uGGACGAUgCCGCugCUgAuCGCcGcCGGCa -3'
miRNA:   3'- -CUUGCUA-GGCGugGAgU-GCGcC-GCCG- -5'
18073 3' -58.1 NC_004680.1 + 20152 0.68 0.494432
Target:  5'- cGggUGAUuuGUugUcgccggaggaUCAgGCGGCGGUg -3'
miRNA:   3'- -CuuGCUAggCGugG----------AGUgCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 1926 0.68 0.484457
Target:  5'- --cCGAUCCGggaaccggccCGCC-CACGCGGCGa- -3'
miRNA:   3'- cuuGCUAGGC----------GUGGaGUGCGCCGCcg -5'
18073 3' -58.1 NC_004680.1 + 43629 0.68 0.47458
Target:  5'- cAGCGuucccggCCGC-CCUggucgaACGUGGCGGCg -3'
miRNA:   3'- cUUGCua-----GGCGuGGAg-----UGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 29057 0.68 0.464804
Target:  5'- cGAACG-UgCGgGCCgCGCGUucGGCGGCg -3'
miRNA:   3'- -CUUGCuAgGCgUGGaGUGCG--CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 9984 0.69 0.449385
Target:  5'- --cUGA-CCGCagcaacgccgaugauGCCUguCGCGGCGGCc -3'
miRNA:   3'- cuuGCUaGGCG---------------UGGAguGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 27252 0.69 0.445574
Target:  5'- --cUGAUCCaCACCcaggaAgGCGGCGGCg -3'
miRNA:   3'- cuuGCUAGGcGUGGag---UgCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 22289 0.69 0.445574
Target:  5'- cGAACGA-CCGCACaaaCUUcgGCGCGGCcucgaaccccaGGCu -3'
miRNA:   3'- -CUUGCUaGGCGUG---GAG--UGCGCCG-----------CCG- -5'
18073 3' -58.1 NC_004680.1 + 48413 0.69 0.445574
Target:  5'- cGGAUGAUCCGCGugUC-CugGaGGCGGUg -3'
miRNA:   3'- -CUUGCUAGGCGU--GGaGugCgCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 32385 0.69 0.444624
Target:  5'- --cUGGUCCGCGCCauuUCGUGCGGCcgucgucgcugcgGGCg -3'
miRNA:   3'- cuuGCUAGGCGUGG---AGUGCGCCG-------------CCG- -5'
18073 3' -58.1 NC_004680.1 + 45646 0.69 0.439892
Target:  5'- gGAACaccacCCGCACCUCAauCGUcuugacgaaugcgagGGCGGCg -3'
miRNA:   3'- -CUUGcua--GGCGUGGAGU--GCG---------------CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 39512 0.69 0.426797
Target:  5'- uAGCGAUCCGUgagaucGCCgauuugCAuCGCcgGGCGGCu -3'
miRNA:   3'- cUUGCUAGGCG------UGGa-----GU-GCG--CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 25260 0.69 0.423098
Target:  5'- cAGCcGUCCGCACCUUuuccgcuGCGCcacgacaaggugguGGUGGCg -3'
miRNA:   3'- cUUGcUAGGCGUGGAG-------UGCG--------------CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 42177 0.69 0.417586
Target:  5'- -cAUGcgCCcCACCUCuGCGCccGGCGGCa -3'
miRNA:   3'- cuUGCuaGGcGUGGAG-UGCG--CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 8658 0.7 0.381987
Target:  5'- cGAACGGcgaaucgaacUCgGUgGCCUguucaCGCGCGGCGGCa -3'
miRNA:   3'- -CUUGCU----------AGgCG-UGGA-----GUGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 8114 0.71 0.32474
Target:  5'- uGAgGGUCCGCugCUgGaCGCGGauuCGGCg -3'
miRNA:   3'- cUUgCUAGGCGugGAgU-GCGCC---GCCG- -5'
18073 3' -58.1 NC_004680.1 + 59108 0.71 0.322434
Target:  5'- cGGCGAacUCCacGCcgACCacauacaaccccgaUCACGCGGCGGCg -3'
miRNA:   3'- cUUGCU--AGG--CG--UGG--------------AGUGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 9205 0.71 0.3096
Target:  5'- uGugGAuUUCGCGCCggucaaugGCGCGGUGGCg -3'
miRNA:   3'- cUugCU-AGGCGUGGag------UGCGCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.