Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18073 | 5' | -52.7 | NC_004680.1 | + | 42016 | 0.77 | 0.279638 |
Target: 5'- -aACCGUCCcUGAAgaucugcacgcaGUGCGGCGGCg- -3' miRNA: 3'- aaUGGCAGGaACUU------------UAUGCCGCCGgg -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 7664 | 0.66 | 0.861387 |
Target: 5'- -aGCCGUUCaucGAGcg-UGGCGGCCUg -3' miRNA: 3'- aaUGGCAGGaa-CUUuauGCCGCCGGG- -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 42635 | 0.66 | 0.849476 |
Target: 5'- -aACaUGUCCUggccca--GGCGGCCCg -3' miRNA: 3'- aaUG-GCAGGAacuuuaugCCGCCGGG- -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 21873 | 0.66 | 0.844228 |
Target: 5'- -cACCaucacUCCUgaggUGGGAuuccgcUACGGCGGUCCg -3' miRNA: 3'- aaUGGc----AGGA----ACUUU------AUGCCGCCGGG- -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 58753 | 0.66 | 0.832576 |
Target: 5'- -aGCCGaccacCCUaggccugauguggaUGAAAUACGGCGacgacccaacaGCCCa -3' miRNA: 3'- aaUGGCa----GGA--------------ACUUUAUGCCGC-----------CGGG- -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 17093 | 0.67 | 0.777439 |
Target: 5'- -aGCCGUUCgau-----UGGCGGCCCc -3' miRNA: 3'- aaUGGCAGGaacuuuauGCCGCCGGG- -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 12447 | 0.73 | 0.473109 |
Target: 5'- -cACCGg---UGGug-GCGGCGGCCCg -3' miRNA: 3'- aaUGGCaggaACUuuaUGCCGCCGGG- -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 12685 | 0.74 | 0.423224 |
Target: 5'- -aACCGggCCaucGAGUACGGCGGCCa -3' miRNA: 3'- aaUGGCa-GGaacUUUAUGCCGCCGGg -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 43661 | 0.74 | 0.41363 |
Target: 5'- -aGCCGcCCUUGAugacgcGCGGUGuGCCCu -3' miRNA: 3'- aaUGGCaGGAACUuua---UGCCGC-CGGG- -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 11078 | 0.75 | 0.341925 |
Target: 5'- cUGCCGggcggCCUUGG----UGGCGGCCCc -3' miRNA: 3'- aAUGGCa----GGAACUuuauGCCGCCGGG- -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 3833 | 0.76 | 0.301879 |
Target: 5'- gUGCCGUCggaGAAuguGUACGcGCGGCCCg -3' miRNA: 3'- aAUGGCAGgaaCUU---UAUGC-CGCCGGG- -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 20105 | 0.68 | 0.724848 |
Target: 5'- -aACCGUUCgucccAUACGGCGGCa- -3' miRNA: 3'- aaUGGCAGGaacuuUAUGCCGCCGgg -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 12964 | 0.68 | 0.724848 |
Target: 5'- -gACCuggCCUUGG---GCGGCGGCUUg -3' miRNA: 3'- aaUGGca-GGAACUuuaUGCCGCCGGG- -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 57739 | 0.67 | 0.777439 |
Target: 5'- -gGCgGUCCUUGcGGAuuugauuagcUugGGCGGCUg -3' miRNA: 3'- aaUGgCAGGAAC-UUU----------AugCCGCCGGg -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 47220 | 0.67 | 0.777439 |
Target: 5'- gUACgGUCCgg-----GCGGUGGCUCg -3' miRNA: 3'- aAUGgCAGGaacuuuaUGCCGCCGGG- -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 7852 | 0.67 | 0.79747 |
Target: 5'- cUUGCCGUCCUgcgcgaACGGCGaCCa -3' miRNA: 3'- -AAUGGCAGGAacuuuaUGCCGCcGGg -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 13956 | 0.67 | 0.798453 |
Target: 5'- gUUACCGUCCcagucgccguUGCugucGCGGCCCa -3' miRNA: 3'- -AAUGGCAGGaacuuu----AUGc---CGCCGGG- -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 40873 | 0.66 | 0.852927 |
Target: 5'- -gGCCGggUCggUGAGAgcaACGGCGGUCa -3' miRNA: 3'- aaUGGC--AGgaACUUUa--UGCCGCCGGg -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 13717 | 0.66 | 0.852927 |
Target: 5'- -cGCCGgcaCCUUcGuAGUACaGCGGCCa -3' miRNA: 3'- aaUGGCa--GGAA-CuUUAUGcCGCCGGg -5' |
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18073 | 5' | -52.7 | NC_004680.1 | + | 8909 | 1.09 | 0.001971 |
Target: 5'- cUUACCGUCCUUGAAAUACGGCGGCCCc -3' miRNA: 3'- -AAUGGCAGGAACUUUAUGCCGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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