Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18074 | 3' | -45.7 | NC_004680.1 | + | 13826 | 0.66 | 0.998574 |
Target: 5'- uCGAAGUCCuuGUACGGgccgcacaccacUUCGCGggUu -3' miRNA: 3'- -GCUUUAGGugUAUGUU------------GAGCGCuuGu -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 12209 | 0.66 | 0.997412 |
Target: 5'- ---cGUCCGCG-GCAGCguucccCGCGAGCGg -3' miRNA: 3'- gcuuUAGGUGUaUGUUGa-----GCGCUUGU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 26678 | 0.66 | 0.997412 |
Target: 5'- cCGAAGgcCCGC-UACGcACcCGCGAACAg -3' miRNA: 3'- -GCUUUa-GGUGuAUGU-UGaGCGCUUGU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 24275 | 0.66 | 0.997864 |
Target: 5'- ---cAUCCACAUGCcGgUCGCGGu-- -3' miRNA: 3'- gcuuUAGGUGUAUGuUgAGCGCUugu -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 59427 | 0.66 | 0.997864 |
Target: 5'- gGggGuguuUCCGCAgguCAgagGCUUGCGGGCGu -3' miRNA: 3'- gCuuU----AGGUGUau-GU---UGAGCGCUUGU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 32463 | 0.67 | 0.99379 |
Target: 5'- aUGggGUCCACAUGCGuucccacacguGCUCGaauucGGCGu -3' miRNA: 3'- -GCuuUAGGUGUAUGU-----------UGAGCgc---UUGU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 8200 | 0.67 | 0.996265 |
Target: 5'- -cGAAUCCGCGUcCAGCa-GCGGACc -3' miRNA: 3'- gcUUUAGGUGUAuGUUGagCGCUUGu -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 33979 | 0.67 | 0.995551 |
Target: 5'- gCGGAGUuucugcaucgCCACAUACAACg-GCGGcaACAa -3' miRNA: 3'- -GCUUUA----------GGUGUAUGUUGagCGCU--UGU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 20932 | 0.68 | 0.990142 |
Target: 5'- gGAAGcacUCCACAgggUGgGACcagUCGCGAACGg -3' miRNA: 3'- gCUUU---AGGUGU---AUgUUG---AGCGCUUGU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 49742 | 0.68 | 0.991508 |
Target: 5'- aCGGA--CCgACGUGCGACgaaGCGAACGc -3' miRNA: 3'- -GCUUuaGG-UGUAUGUUGag-CGCUUGU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 5481 | 0.68 | 0.990142 |
Target: 5'- cCGuuGUCCACcaGCAugUCaGCGAugAa -3' miRNA: 3'- -GCuuUAGGUGuaUGUugAG-CGCUugU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 54938 | 0.68 | 0.99272 |
Target: 5'- cCGGAGUCgugGCGUAuCAACUUGCaGGACGg -3' miRNA: 3'- -GCUUUAGg--UGUAU-GUUGAGCG-CUUGU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 28956 | 0.69 | 0.978018 |
Target: 5'- aCGuuguAGUCCACGUGCGGgccggugcguUUCGCGAAgAa -3' miRNA: 3'- -GCu---UUAGGUGUAUGUU----------GAGCGCUUgU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 34033 | 0.69 | 0.984995 |
Target: 5'- cCGAGucguugCCGCcgcACAACUCGCGGcACAc -3' miRNA: 3'- -GCUUua----GGUGua-UGUUGAGCGCU-UGU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 6992 | 0.69 | 0.980567 |
Target: 5'- gCGAcuGAUCCGCAggcGCAuCUCGUGGAg- -3' miRNA: 3'- -GCU--UUAGGUGUa--UGUuGAGCGCUUgu -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 36619 | 0.69 | 0.982889 |
Target: 5'- uCGGAcUCgACAgcgACgAGCUUGCGAGCGg -3' miRNA: 3'- -GCUUuAGgUGUa--UG-UUGAGCGCUUGU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 11448 | 0.7 | 0.972192 |
Target: 5'- cCGAGAUgCGCAUGuCGGaugCGCGGGCGa -3' miRNA: 3'- -GCUUUAgGUGUAU-GUUga-GCGCUUGU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 42386 | 0.7 | 0.961083 |
Target: 5'- ----uUCCGCggccaggGUugGACUCGUGAGCAg -3' miRNA: 3'- gcuuuAGGUG-------UAugUUGAGCGCUUGU- -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 54385 | 0.71 | 0.950133 |
Target: 5'- cCGGGAUCCcgauguggacccacgAacuCAUGCAGCUCGCGGAg- -3' miRNA: 3'- -GCUUUAGG---------------U---GUAUGUUGAGCGCUUgu -5' |
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18074 | 3' | -45.7 | NC_004680.1 | + | 41655 | 0.72 | 0.926253 |
Target: 5'- aGAAGUCCACAccaGCGACUgGCGuucccGCGc -3' miRNA: 3'- gCUUUAGGUGUa--UGUUGAgCGCu----UGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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