Results 1 - 20 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 11786 | 0.73 | 0.353241 |
Target: 5'- -gUGUCCAUG-ACCGCucuCCCCGGGg- -3' miRNA: 3'- uaACAGGUGCuUGGCGu--GGGGCUUgu -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 53870 | 0.67 | 0.723706 |
Target: 5'- ---cUCCACGGGCUGCACCugccucggugCCGcACAu -3' miRNA: 3'- uaacAGGUGCUUGGCGUGG----------GGCuUGU- -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 13316 | 0.68 | 0.647309 |
Target: 5'- -aUG-CCGCG-GCCGguCCCCGAAa- -3' miRNA: 3'- uaACaGGUGCuUGGCguGGGGCUUgu -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 29494 | 0.68 | 0.647309 |
Target: 5'- ----aCUGCGAACCGaaCGCCUCGAACGc -3' miRNA: 3'- uaacaGGUGCUUGGC--GUGGGGCUUGU- -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 52075 | 0.68 | 0.636253 |
Target: 5'- --cGUCgCACGGACCGCugUauCCGuACAa -3' miRNA: 3'- uaaCAG-GUGCUUGGCGugG--GGCuUGU- -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 46470 | 0.69 | 0.559287 |
Target: 5'- -aUGUCCcaccuGCGGAUC-UGCCCCGGACAc -3' miRNA: 3'- uaACAGG-----UGCUUGGcGUGGGGCUUGU- -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 35916 | 0.69 | 0.554949 |
Target: 5'- cUUGUCCGCGAucaaucugGCCGCcggggcgcaucaCCCGAACu -3' miRNA: 3'- uAACAGGUGCU--------UGGCGug----------GGGCUUGu -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 38693 | 0.69 | 0.548461 |
Target: 5'- --aGUCCAUGAACCGUcUgUCGGGCAu -3' miRNA: 3'- uaaCAGGUGCUUGGCGuGgGGCUUGU- -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 48502 | 0.7 | 0.527015 |
Target: 5'- --cGUCCGgGGaaGCCGCugCCCGGuCGg -3' miRNA: 3'- uaaCAGGUgCU--UGGCGugGGGCUuGU- -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 36998 | 0.7 | 0.505891 |
Target: 5'- --gGUCCGCGugauCCGuUACCCCGAggGCGc -3' miRNA: 3'- uaaCAGGUGCuu--GGC-GUGGGGCU--UGU- -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 6943 | 0.67 | 0.691288 |
Target: 5'- --cGUCCAUGAACuCGUugacGCCCUGAu-- -3' miRNA: 3'- uaaCAGGUGCUUG-GCG----UGGGGCUugu -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 6776 | 0.67 | 0.691288 |
Target: 5'- -aUGUuccagUCACGAACCGCaACCacauCGAACAc -3' miRNA: 3'- uaACA-----GGUGCUUGGCG-UGGg---GCUUGU- -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 30802 | 0.67 | 0.702167 |
Target: 5'- ---aUCCAaacucucuUGGAUCGCAgCCCGGACAg -3' miRNA: 3'- uaacAGGU--------GCUUGGCGUgGGGCUUGU- -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 938 | 0.67 | 0.723706 |
Target: 5'- --cGUCaCAcCGAACCgGCGCCuCCGggUg -3' miRNA: 3'- uaaCAG-GU-GCUUGG-CGUGG-GGCuuGu -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 23213 | 0.66 | 0.734343 |
Target: 5'- --cGUCCACGAcguCUGC-UCCCGcGCAu -3' miRNA: 3'- uaaCAGGUGCUu--GGCGuGGGGCuUGU- -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 11802 | 0.66 | 0.744877 |
Target: 5'- gGUUGUUCugGuACUGCGggCCGAACAc -3' miRNA: 3'- -UAACAGGugCuUGGCGUggGGCUUGU- -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 43792 | 0.66 | 0.754259 |
Target: 5'- --gGUCCAgGAACUGCaacggugGCCCCucaGACAg -3' miRNA: 3'- uaaCAGGUgCUUGGCG-------UGGGGc--UUGU- -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 40845 | 0.66 | 0.755295 |
Target: 5'- -aUGUCgAUG-ACUGCACCCUuGGCAu -3' miRNA: 3'- uaACAGgUGCuUGGCGUGGGGcUUGU- -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 30086 | 0.66 | 0.77574 |
Target: 5'- uUUGUCCcauucgGCGAGCUGgauaACCUCGGGCu -3' miRNA: 3'- uAACAGG------UGCUUGGCg---UGGGGCUUGu -5' |
|||||||
18074 | 5' | -54.6 | NC_004680.1 | + | 9238 | 1.07 | 0.001672 |
Target: 5'- gAUUGUCCACGAACCGCACCCCGAACAg -3' miRNA: 3'- -UAACAGGUGCUUGGCGUGGGGCUUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home