miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18076 5' -53 NC_004680.1 + 12969 0.66 0.855669
Target:  5'- gGCUGGAccuggCCUU--GGGCG-GCGGCUUg -3'
miRNA:   3'- -UGGCCUa----GGAGuuUUCGCuUGCCGAG- -5'
18076 5' -53 NC_004680.1 + 21558 0.66 0.847058
Target:  5'- gGCCGGuggCCUCAucuGGCGAGCaacGC-Cg -3'
miRNA:   3'- -UGGCCua-GGAGUuu-UCGCUUGc--CGaG- -5'
18076 5' -53 NC_004680.1 + 15968 0.66 0.84178
Target:  5'- cACCGGuGUCCUCAcccggcucaggcgccAcgaaauAGGCGuACGGCUg -3'
miRNA:   3'- -UGGCC-UAGGAGU---------------U------UUCGCuUGCCGAg -5'
18076 5' -53 NC_004680.1 + 21486 0.66 0.838215
Target:  5'- cGCCGGAUCgUCGucguGCGaAACGGa-- -3'
miRNA:   3'- -UGGCCUAGgAGUuuu-CGC-UUGCCgag -5'
18076 5' -53 NC_004680.1 + 32284 0.66 0.823605
Target:  5'- cGCCc--UCCUCAAGAGCauuGAgaagcugcgaccgcuGCGGCUCa -3'
miRNA:   3'- -UGGccuAGGAGUUUUCG---CU---------------UGCCGAG- -5'
18076 5' -53 NC_004680.1 + 48852 0.66 0.819867
Target:  5'- uGCCGGAUCC-CAAAccGUGcGCGcGCUUc -3'
miRNA:   3'- -UGGCCUAGGaGUUUu-CGCuUGC-CGAG- -5'
18076 5' -53 NC_004680.1 + 49742 0.67 0.780816
Target:  5'- -aCGGA-CCgacgugCGacGAAGCGAACGcGCUCa -3'
miRNA:   3'- ugGCCUaGGa-----GU--UUUCGCUUGC-CGAG- -5'
18076 5' -53 NC_004680.1 + 36057 0.67 0.774721
Target:  5'- cCCGGGUCCagguggaagaacuuuUCGAuggcGGCGAGCaGUUCg -3'
miRNA:   3'- uGGCCUAGG---------------AGUUu---UCGCUUGcCGAG- -5'
18076 5' -53 NC_004680.1 + 45671 0.68 0.749818
Target:  5'- cACCGGGguuUCCgUCGgugguGGAGgGAACGGCg- -3'
miRNA:   3'- -UGGCCU---AGG-AGU-----UUUCgCUUGCCGag -5'
18076 5' -53 NC_004680.1 + 891 0.68 0.739222
Target:  5'- uGCCGGcaAUCCgguGGGGCGucCGGUUCg -3'
miRNA:   3'- -UGGCC--UAGGaguUUUCGCuuGCCGAG- -5'
18076 5' -53 NC_004680.1 + 12784 0.69 0.651449
Target:  5'- aACUGGAUCaC-CAGGAucGCGGGCGGUUUg -3'
miRNA:   3'- -UGGCCUAG-GaGUUUU--CGCUUGCCGAG- -5'
18076 5' -53 NC_004680.1 + 26634 0.7 0.59561
Target:  5'- -gCGGaAUCCUCGGGAGCaAACGGUg- -3'
miRNA:   3'- ugGCC-UAGGAGUUUUCGcUUGCCGag -5'
18076 5' -53 NC_004680.1 + 40873 0.7 0.5845
Target:  5'- gGCCGGGUCggUGAGAGC-AACGGCg- -3'
miRNA:   3'- -UGGCCUAGgaGUUUUCGcUUGCCGag -5'
18076 5' -53 NC_004680.1 + 15040 0.71 0.57343
Target:  5'- gGCCGGAucgUCCUCAAAGG-GAACaGCc- -3'
miRNA:   3'- -UGGCCU---AGGAGUUUUCgCUUGcCGag -5'
18076 5' -53 NC_004680.1 + 29850 0.72 0.508333
Target:  5'- uCCuGAUCCUCGAcguUGAACGGCUCc -3'
miRNA:   3'- uGGcCUAGGAGUUuucGCUUGCCGAG- -5'
18076 5' -53 NC_004680.1 + 47324 0.72 0.48731
Target:  5'- uGCCGGAcaacggUCUUAGAAGCGGaggaugguuGCGGCUUc -3'
miRNA:   3'- -UGGCCUa-----GGAGUUUUCGCU---------UGCCGAG- -5'
18076 5' -53 NC_004680.1 + 10073 0.74 0.407782
Target:  5'- gACCGGuccCCUCAAGGGU--GCGGUUCa -3'
miRNA:   3'- -UGGCCua-GGAGUUUUCGcuUGCCGAG- -5'
18076 5' -53 NC_004680.1 + 9441 1.1 0.001439
Target:  5'- aACCGGAUCCUCAAAAGCGAACGGCUCa -3'
miRNA:   3'- -UGGCCUAGGAGUUUUCGCUUGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.