miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18077 3' -54.8 NC_004680.1 + 40965 0.66 0.732923
Target:  5'- aCGCCGCGGGCggUgGUCCAC--UGCuGAu -3'
miRNA:   3'- aGCGGCGCUUG--GgUAGGUGuuACG-CU- -5'
18077 3' -54.8 NC_004680.1 + 34143 0.67 0.711701
Target:  5'- gCGCaGCGGAUCUAUgCGCA-UGCGGa -3'
miRNA:   3'- aGCGgCGCUUGGGUAgGUGUuACGCU- -5'
18077 3' -54.8 NC_004680.1 + 1955 0.67 0.711701
Target:  5'- cCGCCGCcaccaacAGCCCAcUCCACAAccCGAu -3'
miRNA:   3'- aGCGGCGc------UUGGGU-AGGUGUUacGCU- -5'
18077 3' -54.8 NC_004680.1 + 20523 0.67 0.711701
Target:  5'- aUCGUgauCGCGGugCCGUUCGgGAUGCc- -3'
miRNA:   3'- -AGCG---GCGCUugGGUAGGUgUUACGcu -5'
18077 3' -54.8 NC_004680.1 + 55440 0.67 0.700968
Target:  5'- cUCGCCGCGGcgaucACCCAaa-ACuAUGUGAu -3'
miRNA:   3'- -AGCGGCGCU-----UGGGUaggUGuUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 11833 0.67 0.690168
Target:  5'- gUCGCCGCGcGACUUcgCgCACAGcGUGAu -3'
miRNA:   3'- -AGCGGCGC-UUGGGuaG-GUGUUaCGCU- -5'
18077 3' -54.8 NC_004680.1 + 9890 0.68 0.668413
Target:  5'- cCGCCGCGAcagGCaUCAUCgGCGuugcUGCGGu -3'
miRNA:   3'- aGCGGCGCU---UG-GGUAGgUGUu---ACGCU- -5'
18077 3' -54.8 NC_004680.1 + 42759 0.68 0.665136
Target:  5'- gUCGCCGCGGcauccguguaggagGCgCCGUCguCGAgcagGCGGg -3'
miRNA:   3'- -AGCGGCGCU--------------UG-GGUAGguGUUa---CGCU- -5'
18077 3' -54.8 NC_004680.1 + 44304 0.68 0.657479
Target:  5'- cUGCCGCuaGGCCCGg--ACAGUGCGAu -3'
miRNA:   3'- aGCGGCGc-UUGGGUaggUGUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 25583 0.68 0.657479
Target:  5'- -gGCCuuGAGCCCcgCCACGcgGUGu -3'
miRNA:   3'- agCGGcgCUUGGGuaGGUGUuaCGCu -5'
18077 3' -54.8 NC_004680.1 + 8792 0.68 0.635551
Target:  5'- cUGCCgGCGGagACCCGUCC-CGGcGCGGu -3'
miRNA:   3'- aGCGG-CGCU--UGGGUAGGuGUUaCGCU- -5'
18077 3' -54.8 NC_004680.1 + 53028 0.68 0.634454
Target:  5'- cUCGCgGCGGACgagaaugCCG-CCGCuAUGCGAc -3'
miRNA:   3'- -AGCGgCGCUUG-------GGUaGGUGuUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 27343 0.69 0.602661
Target:  5'- gUCGCCGCcgccGCCU-UCCugGGUGUGGa -3'
miRNA:   3'- -AGCGGCGcu--UGGGuAGGugUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 40647 0.69 0.602661
Target:  5'- aCGCgCGCaGAGCCCcacgCCACGacGUGCGc -3'
miRNA:   3'- aGCG-GCG-CUUGGGua--GGUGU--UACGCu -5'
18077 3' -54.8 NC_004680.1 + 16922 0.69 0.602661
Target:  5'- aCGgaUGUGGACCCGUCCcCAGUcGCGGg -3'
miRNA:   3'- aGCg-GCGCUUGGGUAGGuGUUA-CGCU- -5'
18077 3' -54.8 NC_004680.1 + 49983 0.69 0.591735
Target:  5'- cCGCCGCGcACCC--UgGCAGUGgGAg -3'
miRNA:   3'- aGCGGCGCuUGGGuaGgUGUUACgCU- -5'
18077 3' -54.8 NC_004680.1 + 17058 0.69 0.591735
Target:  5'- gCGCCGCcaacacGAACCCGUCaGCGGU-CGAg -3'
miRNA:   3'- aGCGGCG------CUUGGGUAGgUGUUAcGCU- -5'
18077 3' -54.8 NC_004680.1 + 2675 0.69 0.569994
Target:  5'- cCGUgGCGGAUCagGUCCGCuAUGCGGu -3'
miRNA:   3'- aGCGgCGCUUGGg-UAGGUGuUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 33111 0.7 0.552743
Target:  5'- cCGCCGCGAcgucgaagaggGCCgcaucgccaccaccuCAUCCACAAcUGUGGa -3'
miRNA:   3'- aGCGGCGCU-----------UGG---------------GUAGGUGUU-ACGCU- -5'
18077 3' -54.8 NC_004680.1 + 40790 0.7 0.537779
Target:  5'- cCGCCGUugcucucaccGACCCggCCACAugGUGCGAc -3'
miRNA:   3'- aGCGGCGc---------UUGGGuaGGUGU--UACGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.