Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18077 | 5' | -52.2 | NC_004680.1 | + | 11832 | 0.71 | 0.621278 |
Target: 5'- ---aGUCGC-CGcgCGACUUCGCGCa -3' miRNA: 3'- gaagCAGCGuGCuaGUUGGAGUGCGc -5' |
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18077 | 5' | -52.2 | NC_004680.1 | + | 7377 | 0.7 | 0.709283 |
Target: 5'- -gUUGUUGCGCGuAUCGACUaUGCGCGu -3' miRNA: 3'- gaAGCAGCGUGC-UAGUUGGaGUGCGC- -5' |
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18077 | 5' | -52.2 | NC_004680.1 | + | 18283 | 0.67 | 0.856394 |
Target: 5'- gUUCGUCGuCACGGaaGACgCUaCugGCGg -3' miRNA: 3'- gAAGCAGC-GUGCUagUUG-GA-GugCGC- -5' |
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18077 | 5' | -52.2 | NC_004680.1 | + | 10118 | 0.66 | 0.895229 |
Target: 5'- -gUCGUCGaaUACGggUGACCUCAaGCGc -3' miRNA: 3'- gaAGCAGC--GUGCuaGUUGGAGUgCGC- -5' |
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18077 | 5' | -52.2 | NC_004680.1 | + | 49821 | 0.72 | 0.588149 |
Target: 5'- gCUUCGUCGCACGucgGUCcgucggguucgGACCaaGCGCGu -3' miRNA: 3'- -GAAGCAGCGUGC---UAG-----------UUGGagUGCGC- -5' |
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18077 | 5' | -52.2 | NC_004680.1 | + | 52232 | 0.68 | 0.805934 |
Target: 5'- ---aGUUGCGCGAUCAccuuuucacguuccgGCCgggUCACGCu -3' miRNA: 3'- gaagCAGCGUGCUAGU---------------UGG---AGUGCGc -5' |
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18077 | 5' | -52.2 | NC_004680.1 | + | 39086 | 0.67 | 0.853866 |
Target: 5'- gCUUCGgcgauaCGCAUcGUCAagucauccucggacACCUCACGCu -3' miRNA: 3'- -GAAGCa-----GCGUGcUAGU--------------UGGAGUGCGc -5' |
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18077 | 5' | -52.2 | NC_004680.1 | + | 48694 | 0.66 | 0.880464 |
Target: 5'- aUUCGUUGUACGAggcuUCGACgaUCACGg- -3' miRNA: 3'- gAAGCAGCGUGCU----AGUUGg-AGUGCgc -5' |
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18077 | 5' | -52.2 | NC_004680.1 | + | 39995 | 0.66 | 0.887979 |
Target: 5'- -cUCGccacCGUGCGAUCGACUUC-CGUGu -3' miRNA: 3'- gaAGCa---GCGUGCUAGUUGGAGuGCGC- -5' |
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18077 | 5' | -52.2 | NC_004680.1 | + | 31568 | 0.66 | 0.887979 |
Target: 5'- --aCGUgCGCAgGAgccgUCAcuACCUUGCGCGg -3' miRNA: 3'- gaaGCA-GCGUgCU----AGU--UGGAGUGCGC- -5' |
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18077 | 5' | -52.2 | NC_004680.1 | + | 41207 | 0.66 | 0.902211 |
Target: 5'- uUUCGcCGUAcCGGUCAACCUcCACa-- -3' miRNA: 3'- gAAGCaGCGU-GCUAGUUGGA-GUGcgc -5' |
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18077 | 5' | -52.2 | NC_004680.1 | + | 8966 | 0.66 | 0.906936 |
Target: 5'- -gUUGUCcauGCccaacacgaccugaACGAUCcgcACCUCACGCGg -3' miRNA: 3'- gaAGCAG---CG--------------UGCUAGu--UGGAGUGCGC- -5' |
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18077 | 5' | -52.2 | NC_004680.1 | + | 9525 | 0.66 | 0.908919 |
Target: 5'- --cCGUCaccaGC-CGAacagaucggccUCAACCUCACGCu -3' miRNA: 3'- gaaGCAG----CGuGCU-----------AGUUGGAGUGCGc -5' |
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18077 | 5' | -52.2 | NC_004680.1 | + | 9749 | 1.1 | 0.002215 |
Target: 5'- cCUUCGUCGCACGAUCAACCUCACGCGa -3' miRNA: 3'- -GAAGCAGCGUGCUAGUUGGAGUGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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