miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18078 5' -55 NC_004680.1 + 9690 0.66 0.765673
Target:  5'- gCAGCuuCCUUGGugacguucUCGCCgaUCGCGCGg -3'
miRNA:   3'- -GUUGcgGGAACU--------AGCGGaaGGUGCGC- -5'
18078 5' -55 NC_004680.1 + 9975 0.66 0.745145
Target:  5'- gCAACGCCgaUGAU-GCCUgUCGCgGCGg -3'
miRNA:   3'- -GUUGCGGgaACUAgCGGAaGGUG-CGC- -5'
18078 5' -55 NC_004680.1 + 36760 0.66 0.724162
Target:  5'- uCGAUGCCCUgcuUGGUuccccaCGCCUggaCCuCGCGg -3'
miRNA:   3'- -GUUGCGGGA---ACUA------GCGGAa--GGuGCGC- -5'
18078 5' -55 NC_004680.1 + 12754 0.67 0.713528
Target:  5'- gAugGCCCgguUGAUCaGCUUcaccccggUCUGCGCGg -3'
miRNA:   3'- gUugCGGGa--ACUAG-CGGA--------AGGUGCGC- -5'
18078 5' -55 NC_004680.1 + 36976 0.68 0.659389
Target:  5'- uCGACGUaCUUGGUgaUGCgUUUCCACGCGu -3'
miRNA:   3'- -GUUGCGgGAACUA--GCG-GAAGGUGCGC- -5'
18078 5' -55 NC_004680.1 + 22461 0.68 0.648443
Target:  5'- ---aGCCCguugUGAccaUCGCCgUCCAUGCc -3'
miRNA:   3'- guugCGGGa---ACU---AGCGGaAGGUGCGc -5'
18078 5' -55 NC_004680.1 + 14868 0.68 0.615555
Target:  5'- cCGGCGaCCCcaacagGAUCGCaCgaaCCGCGCGg -3'
miRNA:   3'- -GUUGC-GGGaa----CUAGCG-Gaa-GGUGCGC- -5'
18078 5' -55 NC_004680.1 + 10380 0.7 0.508132
Target:  5'- uCAGCGCCCgUGAcguucagcuccuUCGCCagCCACGaCa -3'
miRNA:   3'- -GUUGCGGGaACU------------AGCGGaaGGUGC-Gc -5'
18078 5' -55 NC_004680.1 + 10668 0.7 0.487513
Target:  5'- gAACGCCUcuUUGAugccgUCGCCgugggcaacgaUCCACGCGu -3'
miRNA:   3'- gUUGCGGG--AACU-----AGCGGa----------AGGUGCGC- -5'
18078 5' -55 NC_004680.1 + 29598 0.71 0.447522
Target:  5'- -cGCGUCgCUUG-UCGCCUUCgAUGCGu -3'
miRNA:   3'- guUGCGG-GAACuAGCGGAAGgUGCGC- -5'
18078 5' -55 NC_004680.1 + 13310 0.72 0.409419
Target:  5'- uGGCGCCCUuuUGGUCGaugugUUUCCACgGCGg -3'
miRNA:   3'- gUUGCGGGA--ACUAGCg----GAAGGUG-CGC- -5'
18078 5' -55 NC_004680.1 + 10802 1.09 0.001168
Target:  5'- uCAACGCCCUUGAUCGCCUUCCACGCGg -3'
miRNA:   3'- -GUUGCGGGAACUAGCGGAAGGUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.