Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18079 | 3' | -56.8 | NC_004680.1 | + | 10934 | 1.09 | 0.000734 |
Target: 5'- aACGUUGUCAGCCACAGCGGCACAGCGa -3' miRNA: 3'- -UGCAACAGUCGGUGUCGCCGUGUCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 32396 | 0.82 | 0.061415 |
Target: 5'- gUGUUGUCccugAGCCGCAGCGGuCGCAGCu -3' miRNA: 3'- uGCAACAG----UCGGUGUCGCC-GUGUCGc -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 21360 | 0.75 | 0.198182 |
Target: 5'- ----cGUCGGCCACguauGGCGGCGcCGGCGg -3' miRNA: 3'- ugcaaCAGUCGGUG----UCGCCGU-GUCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 22034 | 0.71 | 0.3544 |
Target: 5'- cGCGacUGUgGGCCACGGCGGC-CAuGCc -3' miRNA: 3'- -UGCa-ACAgUCGGUGUCGCCGuGU-CGc -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 19576 | 0.7 | 0.397207 |
Target: 5'- cACGUauuccauUGUC-GCUgAgGGCGGCGCGGCGg -3' miRNA: 3'- -UGCA-------ACAGuCGG-UgUCGCCGUGUCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 14511 | 0.7 | 0.416543 |
Target: 5'- ---cUG-CGGCgACGGCGGCACAGaCGu -3' miRNA: 3'- ugcaACaGUCGgUGUCGCCGUGUC-GC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 40243 | 0.69 | 0.425951 |
Target: 5'- ----gGUCAGCCAUGGgGGCGuuGCGg -3' miRNA: 3'- ugcaaCAGUCGGUGUCgCCGUguCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 34667 | 0.68 | 0.481863 |
Target: 5'- uCGUUGUUGcgugcggagacgauGCCuacgACGGCGaGCACAGCGa -3' miRNA: 3'- uGCAACAGU--------------CGG----UGUCGC-CGUGUCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 16677 | 0.68 | 0.484905 |
Target: 5'- -aGUUG-CGGCCGCagGGCGGUAuCGGUGu -3' miRNA: 3'- ugCAACaGUCGGUG--UCGCCGU-GUCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 12603 | 0.68 | 0.515811 |
Target: 5'- gGCGgUG-CAGgC-CGGCGGCAUGGCGc -3' miRNA: 3'- -UGCaACaGUCgGuGUCGCCGUGUCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 54922 | 0.68 | 0.526291 |
Target: 5'- cGCGgaGgu-GUUugAGCGGCACGGCa -3' miRNA: 3'- -UGCaaCaguCGGugUCGCCGUGUCGc -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 54388 | 0.68 | 0.526291 |
Target: 5'- gGCGUaGUaCGcCCACAGUuccgggucuGGCGCAGCGa -3' miRNA: 3'- -UGCAaCA-GUcGGUGUCG---------CCGUGUCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 41449 | 0.67 | 0.53685 |
Target: 5'- uCGUugagacUGUCAGCUuCAGCguguGGUGCGGCGa -3' miRNA: 3'- uGCA------ACAGUCGGuGUCG----CCGUGUCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 33169 | 0.67 | 0.557105 |
Target: 5'- -aGUUGUUugaguuuGGCCAUGGCGGUGuuGCGg -3' miRNA: 3'- ugCAACAG-------UCGGUGUCGCCGUguCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 25711 | 0.67 | 0.558178 |
Target: 5'- uGCGgcGUCGGCgACGGCGGgGaugccgagGGCGa -3' miRNA: 3'- -UGCaaCAGUCGgUGUCGCCgUg-------UCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 42818 | 0.67 | 0.558178 |
Target: 5'- gGCGguccCAGCCACGaccggggaacuuGCGGCGCAacGCGg -3' miRNA: 3'- -UGCaacaGUCGGUGU------------CGCCGUGU--CGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 34452 | 0.67 | 0.57974 |
Target: 5'- cGCGgagUGUUucGCCGCcGCGGUAguCGGCGa -3' miRNA: 3'- -UGCa--ACAGu-CGGUGuCGCCGU--GUCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 25816 | 0.67 | 0.590589 |
Target: 5'- uGCGU--UCGGCacuGCGGCGGCggccgccaccACGGCGa -3' miRNA: 3'- -UGCAacAGUCGg--UGUCGCCG----------UGUCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 7384 | 0.66 | 0.601472 |
Target: 5'- uCGUUGgugcgucaacUCGGCCucauucuCAGCGGCcucaucagacGCGGCGa -3' miRNA: 3'- uGCAAC----------AGUCGGu------GUCGCCG----------UGUCGC- -5' |
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18079 | 3' | -56.8 | NC_004680.1 | + | 2494 | 0.66 | 0.601472 |
Target: 5'- gGCGUUG-CGGgCGCGGCG-CAUuuGGCGg -3' miRNA: 3'- -UGCAACaGUCgGUGUCGCcGUG--UCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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