miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1808 3' -59.6 NC_001347.2 + 48115 0.66 0.885988
Target:  5'- uCCCUggaagcgugUGUGGgccggCCCUCGGGguGCGGGuGGCg -3'
miRNA:   3'- -GGGG---------ACACCa----GGGGGCUC--UGCUC-UCG- -5'
1808 3' -59.6 NC_001347.2 + 27580 0.66 0.872718
Target:  5'- uCUCCgucgGUGGUggaCCCCCccuGACuGAGAGUu -3'
miRNA:   3'- -GGGGa---CACCA---GGGGGcu-CUG-CUCUCG- -5'
1808 3' -59.6 NC_001347.2 + 229376 0.66 0.858695
Target:  5'- gCCCCU-UGGUCgcggCCgCGGGGCcgGAGGGCc -3'
miRNA:   3'- -GGGGAcACCAG----GGgGCUCUG--CUCUCG- -5'
1808 3' -59.6 NC_001347.2 + 70620 0.67 0.851412
Target:  5'- gCCgaCUGUGGUCUgUUCGAacGugGAGGGCg -3'
miRNA:   3'- -GGg-GACACCAGG-GGGCU--CugCUCUCG- -5'
1808 3' -59.6 NC_001347.2 + 37366 0.67 0.828543
Target:  5'- cUCCCg--GG-UgCCCGAGACGGGGGg -3'
miRNA:   3'- -GGGGacaCCaGgGGGCUCUGCUCUCg -5'
1808 3' -59.6 NC_001347.2 + 112326 0.68 0.787396
Target:  5'- gCUCCUGccacgccGGUCCCUgGGGACGaAGAacGCg -3'
miRNA:   3'- -GGGGACa------CCAGGGGgCUCUGC-UCU--CG- -5'
1808 3' -59.6 NC_001347.2 + 51437 0.68 0.787396
Target:  5'- uCCUCUGUcGUCCCggccuCCGu--CGAGAGCg -3'
miRNA:   3'- -GGGGACAcCAGGG-----GGCucuGCUCUCG- -5'
1808 3' -59.6 NC_001347.2 + 165861 0.68 0.761186
Target:  5'- --aCUGUGGUUCCCCcucuacuucGAGGCuGAGuGCa -3'
miRNA:   3'- gggGACACCAGGGGG---------CUCUG-CUCuCG- -5'
1808 3' -59.6 NC_001347.2 + 87314 0.69 0.7432
Target:  5'- gCCCCc---GUCgCCCGAGGCGgaGGAGCc -3'
miRNA:   3'- -GGGGacacCAGgGGGCUCUGC--UCUCG- -5'
1808 3' -59.6 NC_001347.2 + 24101 0.69 0.734076
Target:  5'- uCCCCguccagguagGUGGgguaggCCgCCGAGACGuuAGCc -3'
miRNA:   3'- -GGGGa---------CACCa-----GGgGGCUCUGCucUCG- -5'
1808 3' -59.6 NC_001347.2 + 94387 0.69 0.734076
Target:  5'- cCCCCgcucgGGUCCCCCcgggccacGGACGGGAa- -3'
miRNA:   3'- -GGGGaca--CCAGGGGGc-------UCUGCUCUcg -5'
1808 3' -59.6 NC_001347.2 + 167872 0.73 0.499013
Target:  5'- gCCCUacuucaagcaGUGGUagggCCCGAGACGAGAGg -3'
miRNA:   3'- gGGGA----------CACCAgg--GGGCUCUGCUCUCg -5'
1808 3' -59.6 NC_001347.2 + 40303 0.75 0.424552
Target:  5'- gCCgCCUGUGGccUCCCCCuccauccugaaaccgGGGGCGAGcGCg -3'
miRNA:   3'- -GG-GGACACC--AGGGGG---------------CUCUGCUCuCG- -5'
1808 3' -59.6 NC_001347.2 + 183344 1.12 0.001739
Target:  5'- cCCCCUGUGGUCCCCCGAGACGAGAGCc -3'
miRNA:   3'- -GGGGACACCAGGGGGCUCUGCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.