miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1808 5' -55.9 NC_001347.2 + 183308 1.08 0.005016
Target:  5'- uGUACUCUCGCACCACCCACGACCACAg -3'
miRNA:   3'- -CAUGAGAGCGUGGUGGGUGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 177692 0.79 0.335421
Target:  5'- cGUGCUCUCGCGCgCugCC-CGACCAa- -3'
miRNA:   3'- -CAUGAGAGCGUG-GugGGuGCUGGUgu -5'
1808 5' -55.9 NC_001347.2 + 104377 0.78 0.373747
Target:  5'- cGUACUCUCGCAgaCACCgACGgACCACu -3'
miRNA:   3'- -CAUGAGAGCGUg-GUGGgUGC-UGGUGu -5'
1808 5' -55.9 NC_001347.2 + 104225 0.77 0.449822
Target:  5'- -aGCUCUCGCGCUACCU--GGCCGCGc -3'
miRNA:   3'- caUGAGAGCGUGGUGGGugCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 142582 0.76 0.477018
Target:  5'- uGUGCUUaCGCGCCACCU-UGACCACGc -3'
miRNA:   3'- -CAUGAGaGCGUGGUGGGuGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 126657 0.75 0.524047
Target:  5'- gGUGCUCgaagUGCGCgCGCCuCugGACCACGc -3'
miRNA:   3'- -CAUGAGa---GCGUG-GUGG-GugCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 36622 0.75 0.543359
Target:  5'- -cGCUCgCGCGCCuccGCUCGCGGCCGCu -3'
miRNA:   3'- caUGAGaGCGUGG---UGGGUGCUGGUGu -5'
1808 5' -55.9 NC_001347.2 + 148299 0.74 0.60248
Target:  5'- cUGCUCgUCGguCaCugCCACGGCCACGa -3'
miRNA:   3'- cAUGAG-AGCguG-GugGGUGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 104116 0.74 0.60248
Target:  5'- cGUGCUCUCGC-CCGaaCACGGCgGCGa -3'
miRNA:   3'- -CAUGAGAGCGuGGUggGUGCUGgUGU- -5'
1808 5' -55.9 NC_001347.2 + 76179 0.72 0.692045
Target:  5'- cGUGCUCUCGCugaACCcCCCGCugguGCCACc -3'
miRNA:   3'- -CAUGAGAGCG---UGGuGGGUGc---UGGUGu -5'
1808 5' -55.9 NC_001347.2 + 178999 0.71 0.740505
Target:  5'- -cGCUacaacgCGCGCCugACCCGCGGCUACGu -3'
miRNA:   3'- caUGAga----GCGUGG--UGGGUGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 119835 0.71 0.749961
Target:  5'- gGUACUggccUUUGCGCUGCCgCugGACCGCGu -3'
miRNA:   3'- -CAUGA----GAGCGUGGUGG-GugCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 190593 0.71 0.759319
Target:  5'- -cGCgugCUgGCGCCGCCUugGcGCCACGc -3'
miRNA:   3'- caUGa--GAgCGUGGUGGGugC-UGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 71003 0.71 0.759319
Target:  5'- gGUGCUggCgGCGCCggGCgCCACGGCCACAa -3'
miRNA:   3'- -CAUGAgaG-CGUGG--UG-GGUGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 224419 0.71 0.768569
Target:  5'- gGUGCUCUCGCcagucGCCGCaguCGC-ACCACAg -3'
miRNA:   3'- -CAUGAGAGCG-----UGGUGg--GUGcUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 224157 0.71 0.786714
Target:  5'- uUACUCUCGuCACCGCUacucUGGCCGCu -3'
miRNA:   3'- cAUGAGAGC-GUGGUGGgu--GCUGGUGu -5'
1808 5' -55.9 NC_001347.2 + 211194 0.7 0.829622
Target:  5'- aGUuCUUUC-CGCCGCCCAUGuGCCGCGu -3'
miRNA:   3'- -CAuGAGAGcGUGGUGGGUGC-UGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 73312 0.69 0.853376
Target:  5'- -cGCUC-CGgGCCA-UCGCGACCGCAg -3'
miRNA:   3'- caUGAGaGCgUGGUgGGUGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 124317 0.69 0.853376
Target:  5'- -gGCgagC-CGCGCaCGCCCgcGCGGCCGCAg -3'
miRNA:   3'- caUGa--GaGCGUG-GUGGG--UGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 101624 0.69 0.853376
Target:  5'- -gACgcgCcCGUGCCGCCgGCGACCGCc -3'
miRNA:   3'- caUGa--GaGCGUGGUGGgUGCUGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.