miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1808 5' -55.9 NC_001347.2 + 211827 0.67 0.934932
Target:  5'- -gGC-CUgCGCGCCugCCGgccuuuUGACCACAu -3'
miRNA:   3'- caUGaGA-GCGUGGugGGU------GCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 121292 0.67 0.934932
Target:  5'- --cUUCaUGCGCC-CCCACGAgCGCAa -3'
miRNA:   3'- cauGAGaGCGUGGuGGGUGCUgGUGU- -5'
1808 5' -55.9 NC_001347.2 + 173853 0.67 0.924825
Target:  5'- aGUACUCgUUGCuGCCGCgCGCG-CCACc -3'
miRNA:   3'- -CAUGAG-AGCG-UGGUGgGUGCuGGUGu -5'
1808 5' -55.9 NC_001347.2 + 37565 0.67 0.924825
Target:  5'- -gGCUCUCGCGCCGUCaacaGCGugccuuuuGCCGCGc -3'
miRNA:   3'- caUGAGAGCGUGGUGGg---UGC--------UGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 38316 0.67 0.919431
Target:  5'- -cGCUgUCGcCGCCACCgcaGCGGCgGCGa -3'
miRNA:   3'- caUGAgAGC-GUGGUGGg--UGCUGgUGU- -5'
1808 5' -55.9 NC_001347.2 + 73634 0.67 0.913809
Target:  5'- -gGC-CUCGgccgccgcCGCCACCCAUGGCgGCGg -3'
miRNA:   3'- caUGaGAGC--------GUGGUGGGUGCUGgUGU- -5'
1808 5' -55.9 NC_001347.2 + 49478 0.67 0.913809
Target:  5'- -gGCUUUCGuCACCGCgaCCACuuCCACAc -3'
miRNA:   3'- caUGAGAGC-GUGGUG--GGUGcuGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 203237 0.68 0.907961
Target:  5'- -cACUCgggCGCAUCACCCGCcucaugGACC-CGc -3'
miRNA:   3'- caUGAGa--GCGUGGUGGGUG------CUGGuGU- -5'
1808 5' -55.9 NC_001347.2 + 140733 0.68 0.901889
Target:  5'- -cAC-CUCGCGCC-CCgagaaGCGGCCGCGc -3'
miRNA:   3'- caUGaGAGCGUGGuGGg----UGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 151313 0.68 0.901889
Target:  5'- -aGCUCUCcuucgGCgagaucguggccGCCGCCUACGACgACAg -3'
miRNA:   3'- caUGAGAG-----CG------------UGGUGGGUGCUGgUGU- -5'
1808 5' -55.9 NC_001347.2 + 144075 0.68 0.889083
Target:  5'- cGUGCcggUCgUCGCACCGCU--CGGCCACGc -3'
miRNA:   3'- -CAUG---AG-AGCGUGGUGGguGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 129353 0.68 0.882355
Target:  5'- -cGC-CUCGCGCuCACgCCGCcGCCGCGa -3'
miRNA:   3'- caUGaGAGCGUG-GUG-GGUGcUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 38962 0.68 0.882355
Target:  5'- ---aUCU-GCACCGCCUGCGACUGCc -3'
miRNA:   3'- caugAGAgCGUGGUGGGUGCUGGUGu -5'
1808 5' -55.9 NC_001347.2 + 159956 0.69 0.868269
Target:  5'- -cGCUCUCG-AUCACUCAuCGAUCACGc -3'
miRNA:   3'- caUGAGAGCgUGGUGGGU-GCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 167547 0.69 0.866086
Target:  5'- ----cCUCGCGCCGCCCcgugacgacgagcgGCGGCCGa- -3'
miRNA:   3'- caugaGAGCGUGGUGGG--------------UGCUGGUgu -5'
1808 5' -55.9 NC_001347.2 + 149445 0.69 0.860921
Target:  5'- cGUGgUC-CGCGUCGCCCACG-CCACu -3'
miRNA:   3'- -CAUgAGaGCGUGGUGGGUGCuGGUGu -5'
1808 5' -55.9 NC_001347.2 + 202504 0.69 0.860921
Target:  5'- --cCUCUgGCGCCuGCCCugGACgACc -3'
miRNA:   3'- cauGAGAgCGUGG-UGGGugCUGgUGu -5'
1808 5' -55.9 NC_001347.2 + 123963 0.69 0.860921
Target:  5'- -cACUuucCUCGcCACCACuaccaCCACGACCAUg -3'
miRNA:   3'- caUGA---GAGC-GUGGUG-----GGUGCUGGUGu -5'
1808 5' -55.9 NC_001347.2 + 124317 0.69 0.853376
Target:  5'- -gGCgagC-CGCGCaCGCCCgcGCGGCCGCAg -3'
miRNA:   3'- caUGa--GaGCGUG-GUGGG--UGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 192036 0.69 0.853376
Target:  5'- cUGCUgC-CGCGuCCGCCC-CGACCACc -3'
miRNA:   3'- cAUGA-GaGCGU-GGUGGGuGCUGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.