miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1808 5' -55.9 NC_001347.2 + 36470 0.66 0.963268
Target:  5'- aGUGCUg-CGCACgGCgCGCGAUCugGg -3'
miRNA:   3'- -CAUGAgaGCGUGgUGgGUGCUGGugU- -5'
1808 5' -55.9 NC_001347.2 + 36545 0.67 0.939645
Target:  5'- -cGCcgCUCGUugCGCCUACGuagaggcgcACCGCGa -3'
miRNA:   3'- caUGa-GAGCGugGUGGGUGC---------UGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 36622 0.75 0.543359
Target:  5'- -cGCUCgCGCGCCuccGCUCGCGGCCGCu -3'
miRNA:   3'- caUGAGaGCGUGG---UGGGUGCUGGUGu -5'
1808 5' -55.9 NC_001347.2 + 37565 0.67 0.924825
Target:  5'- -gGCUCUCGCGCCGUCaacaGCGugccuuuuGCCGCGc -3'
miRNA:   3'- caUGAGAGCGUGGUGGg---UGC--------UGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 38316 0.67 0.919431
Target:  5'- -cGCUgUCGcCGCCACCgcaGCGGCgGCGa -3'
miRNA:   3'- caUGAgAGC-GUGGUGGg--UGCUGgUGU- -5'
1808 5' -55.9 NC_001347.2 + 38962 0.68 0.882355
Target:  5'- ---aUCU-GCACCGCCUGCGACUGCc -3'
miRNA:   3'- caugAGAgCGUGGUGGGUGCUGGUGu -5'
1808 5' -55.9 NC_001347.2 + 49478 0.67 0.913809
Target:  5'- -gGCUUUCGuCACCGCgaCCACuuCCACAc -3'
miRNA:   3'- caUGAGAGC-GUGGUG--GGUGcuGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 57668 0.66 0.944132
Target:  5'- -aACUUUCGC-UCGCUCGCGcCCGCu -3'
miRNA:   3'- caUGAGAGCGuGGUGGGUGCuGGUGu -5'
1808 5' -55.9 NC_001347.2 + 71003 0.71 0.759319
Target:  5'- gGUGCUggCgGCGCCggGCgCCACGGCCACAa -3'
miRNA:   3'- -CAUGAgaG-CGUGG--UG-GGUGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 73312 0.69 0.853376
Target:  5'- -cGCUC-CGgGCCA-UCGCGACCGCAg -3'
miRNA:   3'- caUGAGaGCgUGGUgGGUGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 73634 0.67 0.913809
Target:  5'- -gGC-CUCGgccgccgcCGCCACCCAUGGCgGCGg -3'
miRNA:   3'- caUGaGAGC--------GUGGUGGGUGCUGgUGU- -5'
1808 5' -55.9 NC_001347.2 + 76179 0.72 0.692045
Target:  5'- cGUGCUCUCGCugaACCcCCCGCugguGCCACc -3'
miRNA:   3'- -CAUGAGAGCG---UGGuGGGUGc---UGGUGu -5'
1808 5' -55.9 NC_001347.2 + 100205 0.66 0.963268
Target:  5'- --cUUCUCGCA--ACCCAUGcACCGCGc -3'
miRNA:   3'- cauGAGAGCGUggUGGGUGC-UGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 101624 0.69 0.853376
Target:  5'- -gACgcgCcCGUGCCGCCgGCGACCGCc -3'
miRNA:   3'- caUGa--GaGCGUGGUGGgUGCUGGUGu -5'
1808 5' -55.9 NC_001347.2 + 103166 0.66 0.956261
Target:  5'- -cGCgCUgGCACCGCUgcuggaGCGACCGCu -3'
miRNA:   3'- caUGaGAgCGUGGUGGg-----UGCUGGUGu -5'
1808 5' -55.9 NC_001347.2 + 103775 0.66 0.948395
Target:  5'- cGUACgccgUCGCGCgCAaccgCCGCGACUACAc -3'
miRNA:   3'- -CAUGag--AGCGUG-GUg---GGUGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 104116 0.74 0.60248
Target:  5'- cGUGCUCUCGC-CCGaaCACGGCgGCGa -3'
miRNA:   3'- -CAUGAGAGCGuGGUggGUGCUGgUGU- -5'
1808 5' -55.9 NC_001347.2 + 104225 0.77 0.449822
Target:  5'- -aGCUCUCGCGCUACCU--GGCCGCGc -3'
miRNA:   3'- caUGAGAGCGUGGUGGGugCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 104377 0.78 0.373747
Target:  5'- cGUACUCUCGCAgaCACCgACGgACCACu -3'
miRNA:   3'- -CAUGAGAGCGUg-GUGGgUGC-UGGUGu -5'
1808 5' -55.9 NC_001347.2 + 112108 0.66 0.948395
Target:  5'- -cACgucCUCGCGCCAgCCCcCG-CCGCGc -3'
miRNA:   3'- caUGa--GAGCGUGGU-GGGuGCuGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.