miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1808 5' -55.9 NC_001347.2 + 119835 0.71 0.749961
Target:  5'- gGUACUggccUUUGCGCUGCCgCugGACCGCGu -3'
miRNA:   3'- -CAUGA----GAGCGUGGUGG-GugCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 121292 0.67 0.934932
Target:  5'- --cUUCaUGCGCC-CCCACGAgCGCAa -3'
miRNA:   3'- cauGAGaGCGUGGuGGGUGCUgGUGU- -5'
1808 5' -55.9 NC_001347.2 + 123963 0.69 0.860921
Target:  5'- -cACUuucCUCGcCACCACuaccaCCACGACCAUg -3'
miRNA:   3'- caUGA---GAGC-GUGGUG-----GGUGCUGGUGu -5'
1808 5' -55.9 NC_001347.2 + 124317 0.69 0.853376
Target:  5'- -gGCgagC-CGCGCaCGCCCgcGCGGCCGCAg -3'
miRNA:   3'- caUGa--GaGCGUG-GUGGG--UGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 125662 0.66 0.952438
Target:  5'- -gACUUUCGCgGCCAcacacaacCCCugGGCCucGCAa -3'
miRNA:   3'- caUGAGAGCG-UGGU--------GGGugCUGG--UGU- -5'
1808 5' -55.9 NC_001347.2 + 126657 0.75 0.524047
Target:  5'- gGUGCUCgaagUGCGCgCGCCuCugGACCACGc -3'
miRNA:   3'- -CAUGAGa---GCGUG-GUGG-GugCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 129353 0.68 0.882355
Target:  5'- -cGC-CUCGCGCuCACgCCGCcGCCGCGa -3'
miRNA:   3'- caUGaGAGCGUG-GUG-GGUGcUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 131366 0.66 0.948395
Target:  5'- uUGCUgUUGCACa--CCACGGCCgGCAg -3'
miRNA:   3'- cAUGAgAGCGUGgugGGUGCUGG-UGU- -5'
1808 5' -55.9 NC_001347.2 + 132317 0.66 0.956261
Target:  5'- cGUGCUCgCGCACCguACCguCGuCCAUu -3'
miRNA:   3'- -CAUGAGaGCGUGG--UGGguGCuGGUGu -5'
1808 5' -55.9 NC_001347.2 + 136578 0.66 0.948395
Target:  5'- -gGCgcagCU-GCACCaACUCAUGACCGCGu -3'
miRNA:   3'- caUGa---GAgCGUGG-UGGGUGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 140733 0.68 0.901889
Target:  5'- -cAC-CUCGCGCC-CCgagaaGCGGCCGCGc -3'
miRNA:   3'- caUGaGAGCGUGGuGGg----UGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 142504 0.66 0.956261
Target:  5'- -aGCUCUCGU--CGCUCAUGuCCACGg -3'
miRNA:   3'- caUGAGAGCGugGUGGGUGCuGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 142582 0.76 0.477018
Target:  5'- uGUGCUUaCGCGCCACCU-UGACCACGc -3'
miRNA:   3'- -CAUGAGaGCGUGGUGGGuGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 143024 0.66 0.956261
Target:  5'- aUGCgg-CGCGCCguACCCgucuccugaaagACGGCCACAc -3'
miRNA:   3'- cAUGagaGCGUGG--UGGG------------UGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 144075 0.68 0.889083
Target:  5'- cGUGCcggUCgUCGCACCGCU--CGGCCACGc -3'
miRNA:   3'- -CAUG---AG-AGCGUGGUGGguGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 148299 0.74 0.60248
Target:  5'- cUGCUCgUCGguCaCugCCACGGCCACGa -3'
miRNA:   3'- cAUGAG-AGCguG-GugGGUGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 149445 0.69 0.860921
Target:  5'- cGUGgUC-CGCGUCGCCCACG-CCACu -3'
miRNA:   3'- -CAUgAGaGCGUGGUGGGUGCuGGUGu -5'
1808 5' -55.9 NC_001347.2 + 149910 0.66 0.956261
Target:  5'- -aACUCUCGCGCCcagaccUCCACGcaaGCCGu- -3'
miRNA:   3'- caUGAGAGCGUGGu-----GGGUGC---UGGUgu -5'
1808 5' -55.9 NC_001347.2 + 151313 0.68 0.901889
Target:  5'- -aGCUCUCcuucgGCgagaucguggccGCCGCCUACGACgACAg -3'
miRNA:   3'- caUGAGAG-----CG------------UGGUGGGUGCUGgUGU- -5'
1808 5' -55.9 NC_001347.2 + 153699 0.67 0.935414
Target:  5'- uUGCUCUCGCACagcuccgagagguCCUcgcaggcggcggcuGCGGCCGCGg -3'
miRNA:   3'- cAUGAGAGCGUGgu-----------GGG--------------UGCUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.