Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1808 | 5' | -55.9 | NC_001347.2 | + | 159956 | 0.69 | 0.868269 |
Target: 5'- -cGCUCUCG-AUCACUCAuCGAUCACGc -3' miRNA: 3'- caUGAGAGCgUGGUGGGU-GCUGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 164099 | 0.66 | 0.944132 |
Target: 5'- gGUACUCaaGUccuGCCACCCGuCG-CCGCGc -3' miRNA: 3'- -CAUGAGagCG---UGGUGGGU-GCuGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 167547 | 0.69 | 0.866086 |
Target: 5'- ----cCUCGCGCCGCCCcgugacgacgagcgGCGGCCGa- -3' miRNA: 3'- caugaGAGCGUGGUGGG--------------UGCUGGUgu -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 173853 | 0.67 | 0.924825 |
Target: 5'- aGUACUCgUUGCuGCCGCgCGCG-CCACc -3' miRNA: 3'- -CAUGAG-AGCG-UGGUGgGUGCuGGUGu -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 177692 | 0.79 | 0.335421 |
Target: 5'- cGUGCUCUCGCGCgCugCC-CGACCAa- -3' miRNA: 3'- -CAUGAGAGCGUG-GugGGuGCUGGUgu -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 178999 | 0.71 | 0.740505 |
Target: 5'- -cGCUacaacgCGCGCCugACCCGCGGCUACGu -3' miRNA: 3'- caUGAga----GCGUGG--UGGGUGCUGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 183308 | 1.08 | 0.005016 |
Target: 5'- uGUACUCUCGCACCACCCACGACCACAg -3' miRNA: 3'- -CAUGAGAGCGUGGUGGGUGCUGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 190593 | 0.71 | 0.759319 |
Target: 5'- -cGCgugCUgGCGCCGCCUugGcGCCACGc -3' miRNA: 3'- caUGa--GAgCGUGGUGGGugC-UGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 192036 | 0.69 | 0.853376 |
Target: 5'- cUGCUgC-CGCGuCCGCCC-CGACCACc -3' miRNA: 3'- cAUGA-GaGCGU-GGUGGGuGCUGGUGu -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 202504 | 0.69 | 0.860921 |
Target: 5'- --cCUCUgGCGCCuGCCCugGACgACc -3' miRNA: 3'- cauGAGAgCGUGG-UGGGugCUGgUGu -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 203237 | 0.68 | 0.907961 |
Target: 5'- -cACUCgggCGCAUCACCCGCcucaugGACC-CGc -3' miRNA: 3'- caUGAGa--GCGUGGUGGGUG------CUGGuGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 208310 | 0.66 | 0.944132 |
Target: 5'- -gGCUCUgGUugUggaGCCCAUGACgACGg -3' miRNA: 3'- caUGAGAgCGugG---UGGGUGCUGgUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 211194 | 0.7 | 0.829622 |
Target: 5'- aGUuCUUUC-CGCCGCCCAUGuGCCGCGu -3' miRNA: 3'- -CAuGAGAGcGUGGUGGGUGC-UGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 211827 | 0.67 | 0.934932 |
Target: 5'- -gGC-CUgCGCGCCugCCGgccuuuUGACCACAu -3' miRNA: 3'- caUGaGA-GCGUGGugGGU------GCUGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 214989 | 0.67 | 0.939645 |
Target: 5'- uGUGC-C-CGCACCACCaCGagcgugccguaGACCACAa -3' miRNA: 3'- -CAUGaGaGCGUGGUGG-GUg----------CUGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 215984 | 0.66 | 0.956261 |
Target: 5'- -aGCUCccCGCGCUGCCUgugGCGGCCGa- -3' miRNA: 3'- caUGAGa-GCGUGGUGGG---UGCUGGUgu -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 224157 | 0.71 | 0.786714 |
Target: 5'- uUACUCUCGuCACCGCUacucUGGCCGCu -3' miRNA: 3'- cAUGAGAGC-GUGGUGGgu--GCUGGUGu -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 224419 | 0.71 | 0.768569 |
Target: 5'- gGUGCUCUCGCcagucGCCGCaguCGC-ACCACAg -3' miRNA: 3'- -CAUGAGAGCG-----UGGUGg--GUGcUGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 227531 | 0.67 | 0.934932 |
Target: 5'- -aACaCUCGCGCUACaCC-CGACCcACAg -3' miRNA: 3'- caUGaGAGCGUGGUG-GGuGCUGG-UGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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