miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1808 5' -55.9 NC_001347.2 + 227531 0.67 0.934932
Target:  5'- -aACaCUCGCGCUACaCC-CGACCcACAg -3'
miRNA:   3'- caUGaGAGCGUGGUG-GGuGCUGG-UGU- -5'
1808 5' -55.9 NC_001347.2 + 224419 0.71 0.768569
Target:  5'- gGUGCUCUCGCcagucGCCGCaguCGC-ACCACAg -3'
miRNA:   3'- -CAUGAGAGCG-----UGGUGg--GUGcUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 224157 0.71 0.786714
Target:  5'- uUACUCUCGuCACCGCUacucUGGCCGCu -3'
miRNA:   3'- cAUGAGAGC-GUGGUGGgu--GCUGGUGu -5'
1808 5' -55.9 NC_001347.2 + 215984 0.66 0.956261
Target:  5'- -aGCUCccCGCGCUGCCUgugGCGGCCGa- -3'
miRNA:   3'- caUGAGa-GCGUGGUGGG---UGCUGGUgu -5'
1808 5' -55.9 NC_001347.2 + 214989 0.67 0.939645
Target:  5'- uGUGC-C-CGCACCACCaCGagcgugccguaGACCACAa -3'
miRNA:   3'- -CAUGaGaGCGUGGUGG-GUg----------CUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 211827 0.67 0.934932
Target:  5'- -gGC-CUgCGCGCCugCCGgccuuuUGACCACAu -3'
miRNA:   3'- caUGaGA-GCGUGGugGGU------GCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 211194 0.7 0.829622
Target:  5'- aGUuCUUUC-CGCCGCCCAUGuGCCGCGu -3'
miRNA:   3'- -CAuGAGAGcGUGGUGGGUGC-UGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 208310 0.66 0.944132
Target:  5'- -gGCUCUgGUugUggaGCCCAUGACgACGg -3'
miRNA:   3'- caUGAGAgCGugG---UGGGUGCUGgUGU- -5'
1808 5' -55.9 NC_001347.2 + 203237 0.68 0.907961
Target:  5'- -cACUCgggCGCAUCACCCGCcucaugGACC-CGc -3'
miRNA:   3'- caUGAGa--GCGUGGUGGGUG------CUGGuGU- -5'
1808 5' -55.9 NC_001347.2 + 202504 0.69 0.860921
Target:  5'- --cCUCUgGCGCCuGCCCugGACgACc -3'
miRNA:   3'- cauGAGAgCGUGG-UGGGugCUGgUGu -5'
1808 5' -55.9 NC_001347.2 + 192036 0.69 0.853376
Target:  5'- cUGCUgC-CGCGuCCGCCC-CGACCACc -3'
miRNA:   3'- cAUGA-GaGCGU-GGUGGGuGCUGGUGu -5'
1808 5' -55.9 NC_001347.2 + 190593 0.71 0.759319
Target:  5'- -cGCgugCUgGCGCCGCCUugGcGCCACGc -3'
miRNA:   3'- caUGa--GAgCGUGGUGGGugC-UGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 183308 1.08 0.005016
Target:  5'- uGUACUCUCGCACCACCCACGACCACAg -3'
miRNA:   3'- -CAUGAGAGCGUGGUGGGUGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 178999 0.71 0.740505
Target:  5'- -cGCUacaacgCGCGCCugACCCGCGGCUACGu -3'
miRNA:   3'- caUGAga----GCGUGG--UGGGUGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 177692 0.79 0.335421
Target:  5'- cGUGCUCUCGCGCgCugCC-CGACCAa- -3'
miRNA:   3'- -CAUGAGAGCGUG-GugGGuGCUGGUgu -5'
1808 5' -55.9 NC_001347.2 + 173853 0.67 0.924825
Target:  5'- aGUACUCgUUGCuGCCGCgCGCG-CCACc -3'
miRNA:   3'- -CAUGAG-AGCG-UGGUGgGUGCuGGUGu -5'
1808 5' -55.9 NC_001347.2 + 167547 0.69 0.866086
Target:  5'- ----cCUCGCGCCGCCCcgugacgacgagcgGCGGCCGa- -3'
miRNA:   3'- caugaGAGCGUGGUGGG--------------UGCUGGUgu -5'
1808 5' -55.9 NC_001347.2 + 164099 0.66 0.944132
Target:  5'- gGUACUCaaGUccuGCCACCCGuCG-CCGCGc -3'
miRNA:   3'- -CAUGAGagCG---UGGUGGGU-GCuGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 159956 0.69 0.868269
Target:  5'- -cGCUCUCG-AUCACUCAuCGAUCACGc -3'
miRNA:   3'- caUGAGAGCgUGGUGGGU-GCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 153699 0.67 0.935414
Target:  5'- uUGCUCUCGCACagcuccgagagguCCUcgcaggcggcggcuGCGGCCGCGg -3'
miRNA:   3'- cAUGAGAGCGUGgu-----------GGG--------------UGCUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.