Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1808 | 5' | -55.9 | NC_001347.2 | + | 183308 | 1.08 | 0.005016 |
Target: 5'- uGUACUCUCGCACCACCCACGACCACAg -3' miRNA: 3'- -CAUGAGAGCGUGGUGGGUGCUGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 136578 | 0.66 | 0.948395 |
Target: 5'- -gGCgcagCU-GCACCaACUCAUGACCGCGu -3' miRNA: 3'- caUGa---GAgCGUGG-UGGGUGCUGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 57668 | 0.66 | 0.944132 |
Target: 5'- -aACUUUCGC-UCGCUCGCGcCCGCu -3' miRNA: 3'- caUGAGAGCGuGGUGGGUGCuGGUGu -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 164099 | 0.66 | 0.944132 |
Target: 5'- gGUACUCaaGUccuGCCACCCGuCG-CCGCGc -3' miRNA: 3'- -CAUGAGagCG---UGGUGGGU-GCuGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 208310 | 0.66 | 0.944132 |
Target: 5'- -gGCUCUgGUugUggaGCCCAUGACgACGg -3' miRNA: 3'- caUGAGAgCGugG---UGGGUGCUGgUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 36545 | 0.67 | 0.939645 |
Target: 5'- -cGCcgCUCGUugCGCCUACGuagaggcgcACCGCGa -3' miRNA: 3'- caUGa-GAGCGugGUGGGUGC---------UGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 214989 | 0.67 | 0.939645 |
Target: 5'- uGUGC-C-CGCACCACCaCGagcgugccguaGACCACAa -3' miRNA: 3'- -CAUGaGaGCGUGGUGG-GUg----------CUGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 153699 | 0.67 | 0.935414 |
Target: 5'- uUGCUCUCGCACagcuccgagagguCCUcgcaggcggcggcuGCGGCCGCGg -3' miRNA: 3'- cAUGAGAGCGUGgu-----------GGG--------------UGCUGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 121292 | 0.67 | 0.934932 |
Target: 5'- --cUUCaUGCGCC-CCCACGAgCGCAa -3' miRNA: 3'- cauGAGaGCGUGGuGGGUGCUgGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 131366 | 0.66 | 0.948395 |
Target: 5'- uUGCUgUUGCACa--CCACGGCCgGCAg -3' miRNA: 3'- cAUGAgAGCGUGgugGGUGCUGG-UGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 112108 | 0.66 | 0.948395 |
Target: 5'- -cACgucCUCGCGCCAgCCCcCG-CCGCGc -3' miRNA: 3'- caUGa--GAGCGUGGU-GGGuGCuGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 103775 | 0.66 | 0.948395 |
Target: 5'- cGUACgccgUCGCGCgCAaccgCCGCGACUACAc -3' miRNA: 3'- -CAUGag--AGCGUG-GUg---GGUGCUGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 100205 | 0.66 | 0.963268 |
Target: 5'- --cUUCUCGCA--ACCCAUGcACCGCGc -3' miRNA: 3'- cauGAGAGCGUggUGGGUGC-UGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 143024 | 0.66 | 0.956261 |
Target: 5'- aUGCgg-CGCGCCguACCCgucuccugaaagACGGCCACAc -3' miRNA: 3'- cAUGagaGCGUGG--UGGG------------UGCUGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 142504 | 0.66 | 0.956261 |
Target: 5'- -aGCUCUCGU--CGCUCAUGuCCACGg -3' miRNA: 3'- caUGAGAGCGugGUGGGUGCuGGUGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 132317 | 0.66 | 0.956261 |
Target: 5'- cGUGCUCgCGCACCguACCguCGuCCAUu -3' miRNA: 3'- -CAUGAGaGCGUGG--UGGguGCuGGUGu -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 149910 | 0.66 | 0.956261 |
Target: 5'- -aACUCUCGCGCCcagaccUCCACGcaaGCCGu- -3' miRNA: 3'- caUGAGAGCGUGGu-----GGGUGC---UGGUgu -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 125662 | 0.66 | 0.952438 |
Target: 5'- -gACUUUCGCgGCCAcacacaacCCCugGGCCucGCAa -3' miRNA: 3'- caUGAGAGCG-UGGU--------GGGugCUGG--UGU- -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 103166 | 0.66 | 0.956261 |
Target: 5'- -cGCgCUgGCACCGCUgcuggaGCGACCGCu -3' miRNA: 3'- caUGaGAgCGUGGUGGg-----UGCUGGUGu -5' |
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1808 | 5' | -55.9 | NC_001347.2 | + | 215984 | 0.66 | 0.956261 |
Target: 5'- -aGCUCccCGCGCUGCCUgugGCGGCCGa- -3' miRNA: 3'- caUGAGa-GCGUGGUGGG---UGCUGGUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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