miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1808 5' -55.9 NC_001347.2 + 142504 0.66 0.956261
Target:  5'- -aGCUCUCGU--CGCUCAUGuCCACGg -3'
miRNA:   3'- caUGAGAGCGugGUGGGUGCuGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 143024 0.66 0.956261
Target:  5'- aUGCgg-CGCGCCguACCCgucuccugaaagACGGCCACAc -3'
miRNA:   3'- cAUGagaGCGUGG--UGGG------------UGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 100205 0.66 0.963268
Target:  5'- --cUUCUCGCA--ACCCAUGcACCGCGc -3'
miRNA:   3'- cauGAGAGCGUggUGGGUGC-UGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 57668 0.66 0.944132
Target:  5'- -aACUUUCGC-UCGCUCGCGcCCGCu -3'
miRNA:   3'- caUGAGAGCGuGGUGGGUGCuGGUGu -5'
1808 5' -55.9 NC_001347.2 + 164099 0.66 0.944132
Target:  5'- gGUACUCaaGUccuGCCACCCGuCG-CCGCGc -3'
miRNA:   3'- -CAUGAGagCG---UGGUGGGU-GCuGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 208310 0.66 0.944132
Target:  5'- -gGCUCUgGUugUggaGCCCAUGACgACGg -3'
miRNA:   3'- caUGAGAgCGugG---UGGGUGCUGgUGU- -5'
1808 5' -55.9 NC_001347.2 + 140733 0.68 0.901889
Target:  5'- -cAC-CUCGCGCC-CCgagaaGCGGCCGCGc -3'
miRNA:   3'- caUGaGAGCGUGGuGGg----UGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 173853 0.67 0.924825
Target:  5'- aGUACUCgUUGCuGCCGCgCGCG-CCACc -3'
miRNA:   3'- -CAUGAG-AGCG-UGGUGgGUGCuGGUGu -5'
1808 5' -55.9 NC_001347.2 + 38316 0.67 0.919431
Target:  5'- -cGCUgUCGcCGCCACCgcaGCGGCgGCGa -3'
miRNA:   3'- caUGAgAGC-GUGGUGGg--UGCUGgUGU- -5'
1808 5' -55.9 NC_001347.2 + 49478 0.67 0.913809
Target:  5'- -gGCUUUCGuCACCGCgaCCACuuCCACAc -3'
miRNA:   3'- caUGAGAGC-GUGGUG--GGUGcuGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 73634 0.67 0.913809
Target:  5'- -gGC-CUCGgccgccgcCGCCACCCAUGGCgGCGg -3'
miRNA:   3'- caUGaGAGC--------GUGGUGGGUGCUGgUGU- -5'
1808 5' -55.9 NC_001347.2 + 37565 0.67 0.924825
Target:  5'- -gGCUCUCGCGCCGUCaacaGCGugccuuuuGCCGCGc -3'
miRNA:   3'- caUGAGAGCGUGGUGGg---UGC--------UGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 227531 0.67 0.934932
Target:  5'- -aACaCUCGCGCUACaCC-CGACCcACAg -3'
miRNA:   3'- caUGaGAGCGUGGUG-GGuGCUGG-UGU- -5'
1808 5' -55.9 NC_001347.2 + 211827 0.67 0.934932
Target:  5'- -gGC-CUgCGCGCCugCCGgccuuuUGACCACAu -3'
miRNA:   3'- caUGaGA-GCGUGGugGGU------GCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 121292 0.67 0.934932
Target:  5'- --cUUCaUGCGCC-CCCACGAgCGCAa -3'
miRNA:   3'- cauGAGaGCGUGGuGGGUGCUgGUGU- -5'
1808 5' -55.9 NC_001347.2 + 153699 0.67 0.935414
Target:  5'- uUGCUCUCGCACagcuccgagagguCCUcgcaggcggcggcuGCGGCCGCGg -3'
miRNA:   3'- cAUGAGAGCGUGgu-----------GGG--------------UGCUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 214989 0.67 0.939645
Target:  5'- uGUGC-C-CGCACCACCaCGagcgugccguaGACCACAa -3'
miRNA:   3'- -CAUGaGaGCGUGGUGG-GUg----------CUGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 36545 0.67 0.939645
Target:  5'- -cGCcgCUCGUugCGCCUACGuagaggcgcACCGCGa -3'
miRNA:   3'- caUGa-GAGCGugGUGGGUGC---------UGGUGU- -5'
1808 5' -55.9 NC_001347.2 + 36470 0.66 0.963268
Target:  5'- aGUGCUg-CGCACgGCgCGCGAUCugGg -3'
miRNA:   3'- -CAUGAgaGCGUGgUGgGUGCUGGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.