miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18081 5' -50.6 NC_004680.1 + 11314 1.1 0.003115
Target:  5'- gCAACGUCGUGUCAUACGGCAACACCGg -3'
miRNA:   3'- -GUUGCAGCACAGUAUGCCGUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 19611 0.8 0.297297
Target:  5'- aCAACGUgGUGUUAccacCGGCGGCGCCGu -3'
miRNA:   3'- -GUUGCAgCACAGUau--GCCGUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 41437 0.77 0.408173
Target:  5'- uCAGCuucagCGUGUgGUGCGGCGAgGCCGg -3'
miRNA:   3'- -GUUGca---GCACAgUAUGCCGUUgUGGC- -5'
18081 5' -50.6 NC_004680.1 + 21359 0.74 0.552461
Target:  5'- --cCGUCGgccaCGUAUGGCGGCGCCGg -3'
miRNA:   3'- guuGCAGCaca-GUAUGCCGUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 18848 0.72 0.652848
Target:  5'- gGGCGUgGUGUCGUggaucggcuACGGCGugGCgGg -3'
miRNA:   3'- gUUGCAgCACAGUA---------UGCCGUugUGgC- -5'
18081 5' -50.6 NC_004680.1 + 45269 0.71 0.708385
Target:  5'- -cACGUUgGUGUCGUcGCGGCGAgagcCGCCGa -3'
miRNA:   3'- guUGCAG-CACAGUA-UGCCGUU----GUGGC- -5'
18081 5' -50.6 NC_004680.1 + 19764 0.71 0.719306
Target:  5'- uGGCGUCGUuccaGUCcgGCGGCAAUggugGCCc -3'
miRNA:   3'- gUUGCAGCA----CAGuaUGCCGUUG----UGGc -5'
18081 5' -50.6 NC_004680.1 + 35121 0.71 0.751483
Target:  5'- -uGCGUCGUGUCAcuggucGCGGCGucuagguCGCCc -3'
miRNA:   3'- guUGCAGCACAGUa-----UGCCGUu------GUGGc -5'
18081 5' -50.6 NC_004680.1 + 2597 0.7 0.802426
Target:  5'- uGGCGUCGUGaugacgGUACGGCGACgAUCa -3'
miRNA:   3'- gUUGCAGCACag----UAUGCCGUUG-UGGc -5'
18081 5' -50.6 NC_004680.1 + 57397 0.69 0.812105
Target:  5'- --uCGUCGUGgacgACGGCcGCACUGg -3'
miRNA:   3'- guuGCAGCACaguaUGCCGuUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 57256 0.69 0.812105
Target:  5'- -uGC-UCGUGggCGUucuCGGCGGCGCCGg -3'
miRNA:   3'- guUGcAGCACa-GUAu--GCCGUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 23141 0.69 0.821588
Target:  5'- aGACGUCGUggacGUCGggcuccACGGgcacCAACACCGg -3'
miRNA:   3'- gUUGCAGCA----CAGUa-----UGCC----GUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 57838 0.69 0.839922
Target:  5'- uGGCGUCGUcGUCGUACca-GGCACCu -3'
miRNA:   3'- gUUGCAGCA-CAGUAUGccgUUGUGGc -5'
18081 5' -50.6 NC_004680.1 + 5040 0.69 0.84788
Target:  5'- -cGCGccuucuuUCGcucGUCAgGCGGCAGCGCCGc -3'
miRNA:   3'- guUGC-------AGCa--CAGUaUGCCGUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 13140 0.69 0.848753
Target:  5'- gCGAgGUCGUaccaucCGUGCGGCGuCACCGc -3'
miRNA:   3'- -GUUgCAGCAca----GUAUGCCGUuGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 20103 0.69 0.848753
Target:  5'- --cCGuUCGUccCAUacgGCGGCAACACCGg -3'
miRNA:   3'- guuGC-AGCAcaGUA---UGCCGUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 40537 0.69 0.848753
Target:  5'- -cGCGUCGUGgCGUGgGGCucuGCGCaCGu -3'
miRNA:   3'- guUGCAGCACaGUAUgCCGu--UGUG-GC- -5'
18081 5' -50.6 NC_004680.1 + 40585 0.69 0.848753
Target:  5'- -cGCGUCGUGgCGUGgGGCucuGCGCaCGu -3'
miRNA:   3'- guUGCAGCACaGUAUgCCGu--UGUG-GC- -5'
18081 5' -50.6 NC_004680.1 + 12255 0.68 0.865698
Target:  5'- cCAcCGUCGgaaCGgauaccuggGCGGCAGCGCCGg -3'
miRNA:   3'- -GUuGCAGCacaGUa--------UGCCGUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 55000 0.68 0.873796
Target:  5'- aAACGUCGggcggccagGaUCAUGCGGCGcauggcuCGCCGc -3'
miRNA:   3'- gUUGCAGCa--------C-AGUAUGCCGUu------GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.