Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18081 | 5' | -50.6 | NC_004680.1 | + | 23141 | 0.69 | 0.821588 |
Target: 5'- aGACGUCGUggacGUCGggcuccACGGgcacCAACACCGg -3' miRNA: 3'- gUUGCAGCA----CAGUa-----UGCC----GUUGUGGC- -5' |
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18081 | 5' | -50.6 | NC_004680.1 | + | 57256 | 0.69 | 0.812105 |
Target: 5'- -uGC-UCGUGggCGUucuCGGCGGCGCCGg -3' miRNA: 3'- guUGcAGCACa-GUAu--GCCGUUGUGGC- -5' |
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18081 | 5' | -50.6 | NC_004680.1 | + | 57397 | 0.69 | 0.812105 |
Target: 5'- --uCGUCGUGgacgACGGCcGCACUGg -3' miRNA: 3'- guuGCAGCACaguaUGCCGuUGUGGC- -5' |
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18081 | 5' | -50.6 | NC_004680.1 | + | 2597 | 0.7 | 0.802426 |
Target: 5'- uGGCGUCGUGaugacgGUACGGCGACgAUCa -3' miRNA: 3'- gUUGCAGCACag----UAUGCCGUUG-UGGc -5' |
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18081 | 5' | -50.6 | NC_004680.1 | + | 35121 | 0.71 | 0.751483 |
Target: 5'- -uGCGUCGUGUCAcuggucGCGGCGucuagguCGCCc -3' miRNA: 3'- guUGCAGCACAGUa-----UGCCGUu------GUGGc -5' |
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18081 | 5' | -50.6 | NC_004680.1 | + | 19764 | 0.71 | 0.719306 |
Target: 5'- uGGCGUCGUuccaGUCcgGCGGCAAUggugGCCc -3' miRNA: 3'- gUUGCAGCA----CAGuaUGCCGUUG----UGGc -5' |
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18081 | 5' | -50.6 | NC_004680.1 | + | 45269 | 0.71 | 0.708385 |
Target: 5'- -cACGUUgGUGUCGUcGCGGCGAgagcCGCCGa -3' miRNA: 3'- guUGCAG-CACAGUA-UGCCGUU----GUGGC- -5' |
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18081 | 5' | -50.6 | NC_004680.1 | + | 18848 | 0.72 | 0.652848 |
Target: 5'- gGGCGUgGUGUCGUggaucggcuACGGCGugGCgGg -3' miRNA: 3'- gUUGCAgCACAGUA---------UGCCGUugUGgC- -5' |
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18081 | 5' | -50.6 | NC_004680.1 | + | 21359 | 0.74 | 0.552461 |
Target: 5'- --cCGUCGgccaCGUAUGGCGGCGCCGg -3' miRNA: 3'- guuGCAGCaca-GUAUGCCGUUGUGGC- -5' |
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18081 | 5' | -50.6 | NC_004680.1 | + | 41437 | 0.77 | 0.408173 |
Target: 5'- uCAGCuucagCGUGUgGUGCGGCGAgGCCGg -3' miRNA: 3'- -GUUGca---GCACAgUAUGCCGUUgUGGC- -5' |
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18081 | 5' | -50.6 | NC_004680.1 | + | 19611 | 0.8 | 0.297297 |
Target: 5'- aCAACGUgGUGUUAccacCGGCGGCGCCGu -3' miRNA: 3'- -GUUGCAgCACAGUau--GCCGUUGUGGC- -5' |
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18081 | 5' | -50.6 | NC_004680.1 | + | 11314 | 1.1 | 0.003115 |
Target: 5'- gCAACGUCGUGUCAUACGGCAACACCGg -3' miRNA: 3'- -GUUGCAGCACAGUAUGCCGUUGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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