miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18082 3' -56.3 NC_004680.1 + 5080 0.67 0.654416
Target:  5'- cGGACAUgCuccUgGAGgaGUGGaCCGCCCa -3'
miRNA:   3'- -CCUGUGgGu--AgUUUggCACC-GGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 851 0.67 0.654416
Target:  5'- cGACgccaGCCCGcUCGAACCGccgacGGCCaGCCa -3'
miRNA:   3'- cCUG----UGGGU-AGUUUGGCa----CCGG-CGGg -5'
18082 3' -56.3 NC_004680.1 + 20531 0.67 0.654416
Target:  5'- uGugGCCCAUCGuGAUCGcgGuGCCGUUCg -3'
miRNA:   3'- cCugUGGGUAGU-UUGGCa-C-CGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 52731 0.67 0.654416
Target:  5'- cGugACCCuuu---CCGUGauucucGCCGCCCa -3'
miRNA:   3'- cCugUGGGuaguuuGGCAC------CGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 33219 0.67 0.654416
Target:  5'- cGGCGUCC-UCAAcgacuACCG-GGCCGCCa -3'
miRNA:   3'- cCUGUGGGuAGUU-----UGGCaCCGGCGGg -5'
18082 3' -56.3 NC_004680.1 + 46010 0.67 0.654416
Target:  5'- -uGCGCCCG-CAc-CCaaGGCCGCCCc -3'
miRNA:   3'- ccUGUGGGUaGUuuGGcaCCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 11135 0.67 0.647965
Target:  5'- aGGAUGCCaucgacggcgggagaCAUCGAcgggGCCGgggGGCCggcugGCCCg -3'
miRNA:   3'- -CCUGUGG---------------GUAGUU----UGGCa--CCGG-----CGGG- -5'
18082 3' -56.3 NC_004680.1 + 42207 0.67 0.643662
Target:  5'- uGGGCugCCAcCAccgcACCGUGcaGCgUGCCCg -3'
miRNA:   3'- -CCUGugGGUaGUu---UGGCAC--CG-GCGGG- -5'
18082 3' -56.3 NC_004680.1 + 19206 0.67 0.630744
Target:  5'- cGGugACCCGcUCGGgcgauguGCCGUGGgugaguaUCGCCg -3'
miRNA:   3'- -CCugUGGGU-AGUU-------UGGCACC-------GGCGGg -5'
18082 3' -56.3 NC_004680.1 + 55744 0.67 0.622132
Target:  5'- aGGC-CCCAaCGAACCGUGGauGCUUc -3'
miRNA:   3'- cCUGuGGGUaGUUUGGCACCggCGGG- -5'
18082 3' -56.3 NC_004680.1 + 40122 0.67 0.622132
Target:  5'- gGGACAaccaCCAaaCAAACUG-GGCCGaCCUg -3'
miRNA:   3'- -CCUGUg---GGUa-GUUUGGCaCCGGC-GGG- -5'
18082 3' -56.3 NC_004680.1 + 38559 0.67 0.618903
Target:  5'- gGGAuCGCCUugguuggugcugugGUgGAuCCGUGGCUgGCCCg -3'
miRNA:   3'- -CCU-GUGGG--------------UAgUUuGGCACCGG-CGGG- -5'
18082 3' -56.3 NC_004680.1 + 30833 0.68 0.611375
Target:  5'- cGACGaUCAUCAcacCCGUaGGCCaGCCCg -3'
miRNA:   3'- cCUGUgGGUAGUuu-GGCA-CCGG-CGGG- -5'
18082 3' -56.3 NC_004680.1 + 7653 0.68 0.611375
Target:  5'- uGACAUUCA-CAAGCCGUucaucgagcguGGCgGCCUg -3'
miRNA:   3'- cCUGUGGGUaGUUUGGCA-----------CCGgCGGG- -5'
18082 3' -56.3 NC_004680.1 + 52281 0.68 0.611375
Target:  5'- uGGACcugACUCGUCuuGCUGaGGCCGCg- -3'
miRNA:   3'- -CCUG---UGGGUAGuuUGGCaCCGGCGgg -5'
18082 3' -56.3 NC_004680.1 + 44118 0.68 0.600635
Target:  5'- uGAgGCCCG-CGAACUGgcuGCCGCUCu -3'
miRNA:   3'- cCUgUGGGUaGUUUGGCac-CGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 5712 0.68 0.589921
Target:  5'- -aGCACCCAgCAGGuucCCGaUGGugcCCGCCCg -3'
miRNA:   3'- ccUGUGGGUaGUUU---GGC-ACC---GGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 20748 0.68 0.589921
Target:  5'- uGGcCGCCgAUCGGGCCuGUuccGCCGCCa -3'
miRNA:   3'- -CCuGUGGgUAGUUUGG-CAc--CGGCGGg -5'
18082 3' -56.3 NC_004680.1 + 11011 0.68 0.589921
Target:  5'- cGGCcucCCCAUCGGGCCagccGGCCcCCCg -3'
miRNA:   3'- cCUGu--GGGUAGUUUGGca--CCGGcGGG- -5'
18082 3' -56.3 NC_004680.1 + 25319 0.68 0.567542
Target:  5'- uGGACAgUCAUCGccUCGUagacgagGGCCGCCa -3'
miRNA:   3'- -CCUGUgGGUAGUuuGGCA-------CCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.