miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18083 3' -51.2 NC_004680.1 + 57077 0.66 0.927474
Target:  5'- aUCUGua-CUCcagcaccaaaACCGUGCUGAaccaccugCAGCCa -3'
miRNA:   3'- -AGACuacGAG----------UGGCAUGACUa-------GUCGG- -5'
18083 3' -51.2 NC_004680.1 + 9631 0.66 0.927474
Target:  5'- gCUGcUGCggGCCGUaacGCUGGUgAGCa -3'
miRNA:   3'- aGACuACGagUGGCA---UGACUAgUCGg -5'
18083 3' -51.2 NC_004680.1 + 41213 0.66 0.92149
Target:  5'- --cGAUGauuUCGCCGUACcGGUCAaCCu -3'
miRNA:   3'- agaCUACg--AGUGGCAUGaCUAGUcGG- -5'
18083 3' -51.2 NC_004680.1 + 13426 0.66 0.92149
Target:  5'- aCUGGUGggCACCGguccGCUGGUUccaaGGCg -3'
miRNA:   3'- aGACUACgaGUGGCa---UGACUAG----UCGg -5'
18083 3' -51.2 NC_004680.1 + 19502 0.66 0.915215
Target:  5'- -gUGGUGgcguugaaCUUACCGgGCUGAcCGGCCu -3'
miRNA:   3'- agACUAC--------GAGUGGCaUGACUaGUCGG- -5'
18083 3' -51.2 NC_004680.1 + 1950 0.66 0.915215
Target:  5'- aCUGGUGa-CGCgGUGCUGG-CuGCCa -3'
miRNA:   3'- aGACUACgaGUGgCAUGACUaGuCGG- -5'
18083 3' -51.2 NC_004680.1 + 56771 0.66 0.915215
Target:  5'- gCUG-UGCUCuuuGgCGUACUGGcgGGCCa -3'
miRNA:   3'- aGACuACGAG---UgGCAUGACUagUCGG- -5'
18083 3' -51.2 NC_004680.1 + 13963 0.66 0.899691
Target:  5'- --gGAUGCcguuaccgucccagUCGCCGuUGCUGucgCGGCCc -3'
miRNA:   3'- agaCUACG--------------AGUGGC-AUGACua-GUCGG- -5'
18083 3' -51.2 NC_004680.1 + 52697 0.66 0.894667
Target:  5'- aCUGAUGUccgCACCaGggaGCUGGaggcgCAGCCg -3'
miRNA:   3'- aGACUACGa--GUGG-Ca--UGACUa----GUCGG- -5'
18083 3' -51.2 NC_004680.1 + 7147 0.66 0.894667
Target:  5'- --cGGUGC-CGCCGaACUGuUUAGCUg -3'
miRNA:   3'- agaCUACGaGUGGCaUGACuAGUCGG- -5'
18083 3' -51.2 NC_004680.1 + 41303 0.67 0.879568
Target:  5'- aUUGGUGgaCgauGCCGcUGCUGAUC-GCCg -3'
miRNA:   3'- aGACUACgaG---UGGC-AUGACUAGuCGG- -5'
18083 3' -51.2 NC_004680.1 + 50193 0.67 0.871613
Target:  5'- --cGGcUGCUCGCCGaAUUGGU-AGCCg -3'
miRNA:   3'- agaCU-ACGAGUGGCaUGACUAgUCGG- -5'
18083 3' -51.2 NC_004680.1 + 14942 0.67 0.854928
Target:  5'- cCUGuuggGgUCGCCGgACUGGagGGCCg -3'
miRNA:   3'- aGACua--CgAGUGGCaUGACUagUCGG- -5'
18083 3' -51.2 NC_004680.1 + 54207 0.68 0.809089
Target:  5'- --aGGUGCUUccauaCGUugUuGAUCAGCCa -3'
miRNA:   3'- agaCUACGAGug---GCAugA-CUAGUCGG- -5'
18083 3' -51.2 NC_004680.1 + 22045 0.69 0.799293
Target:  5'- gUCUGGUGUUCgcGCCGUAUaucgcgaugcgUGGUCcggcggcguucgAGCCg -3'
miRNA:   3'- -AGACUACGAG--UGGCAUG-----------ACUAG------------UCGG- -5'
18083 3' -51.2 NC_004680.1 + 17867 0.69 0.789313
Target:  5'- -aUGAUGUUCACCa-ACUGcgccgCAGCCu -3'
miRNA:   3'- agACUACGAGUGGcaUGACua---GUCGG- -5'
18083 3' -51.2 NC_004680.1 + 25917 0.71 0.682055
Target:  5'- -gUGGU-CUCGCCGUGgUGG-CGGCCg -3'
miRNA:   3'- agACUAcGAGUGGCAUgACUaGUCGG- -5'
18083 3' -51.2 NC_004680.1 + 23037 0.72 0.625775
Target:  5'- aUCUGAUGCuaUCGCCGcucuugGCgacugGAUCAGUg -3'
miRNA:   3'- -AGACUACG--AGUGGCa-----UGa----CUAGUCGg -5'
18083 3' -51.2 NC_004680.1 + 57484 0.73 0.569626
Target:  5'- uUCUGGUGUUCACCGaaagcgacCUGAUCGuCCc -3'
miRNA:   3'- -AGACUACGAGUGGCau------GACUAGUcGG- -5'
18083 3' -51.2 NC_004680.1 + 11992 1.14 0.001261
Target:  5'- uUCUGAUGCUCACCGUACUGAUCAGCCg -3'
miRNA:   3'- -AGACUACGAGUGGCAUGACUAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.