Results 1 - 20 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 11904 | 0.66 | 0.506368 |
Target: 5'- aGUCGcgcGGCGACUgcccgGGGGuugcagACgGCGCCCc -3' miRNA: 3'- -UAGU---CCGCUGGaa---CUCC------UGgCGCGGG- -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 42648 | 0.66 | 0.496291 |
Target: 5'- -cCAGGCGGCCcgccugcucGAcGACgGCGCCUc -3' miRNA: 3'- uaGUCCGCUGGaa-------CUcCUGgCGCGGG- -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 8891 | 0.66 | 0.486305 |
Target: 5'- ---cGGCGGCCccuu-GACCGCGCCg -3' miRNA: 3'- uaguCCGCUGGaacucCUGGCGCGGg -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 26773 | 0.66 | 0.486305 |
Target: 5'- -gCGGGCGACCUguucgcGGGugCGUagcggGCCUu -3' miRNA: 3'- uaGUCCGCUGGAac----UCCugGCG-----CGGG- -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 29063 | 0.66 | 0.476416 |
Target: 5'- uUUGGGCGAacgUGcGGGCCGCGCg- -3' miRNA: 3'- uAGUCCGCUggaACuCCUGGCGCGgg -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 13144 | 0.66 | 0.476416 |
Target: 5'- --uGGGCGGCCUggcGGuccccgaccGGACCGcCGCaCCa -3' miRNA: 3'- uagUCCGCUGGAa--CU---------CCUGGC-GCG-GG- -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 52274 | 0.66 | 0.476416 |
Target: 5'- -aCGGGUgugGACCUgacucgucuugcUGAGG-CCGCGUUCg -3' miRNA: 3'- uaGUCCG---CUGGA------------ACUCCuGGCGCGGG- -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 34236 | 0.66 | 0.476416 |
Target: 5'- -aCAGGCGACCgacUGuaaa-UGCGCCCu -3' miRNA: 3'- uaGUCCGCUGGa--ACuccugGCGCGGG- -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 16750 | 0.66 | 0.466628 |
Target: 5'- -cCcuGCGGCCgcaacugGAGGaucGCCGCGCCa -3' miRNA: 3'- uaGucCGCUGGaa-----CUCC---UGGCGCGGg -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 17191 | 0.66 | 0.466628 |
Target: 5'- -aCuGGCGGCaacgUGAucGGACgGUGCCCc -3' miRNA: 3'- uaGuCCGCUGga--ACU--CCUGgCGCGGG- -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 6136 | 0.67 | 0.428562 |
Target: 5'- -cCAGGCaGCCacacgcgcccaUUGAcGACCuGCGCCCg -3' miRNA: 3'- uaGUCCGcUGG-----------AACUcCUGG-CGCGGG- -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 13523 | 0.67 | 0.418418 |
Target: 5'- -gCGGuGCG-CCUUGGaaccagcGGACCGgUGCCCa -3' miRNA: 3'- uaGUC-CGCuGGAACU-------CCUGGC-GCGGG- -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 13235 | 0.67 | 0.410229 |
Target: 5'- ---cGGCGGuCCggucGGGGACCGCcaggccGCCCa -3' miRNA: 3'- uaguCCGCU-GGaa--CUCCUGGCG------CGGG- -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 44944 | 0.68 | 0.358265 |
Target: 5'- uUCGGuacuccGCcACCgUGGGGACaCGCGCCCc -3' miRNA: 3'- uAGUC------CGcUGGaACUCCUG-GCGCGGG- -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 40404 | 0.69 | 0.350065 |
Target: 5'- -cCAGGC--CCUaGcGGACCGCGCCg -3' miRNA: 3'- uaGUCCGcuGGAaCuCCUGGCGCGGg -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 22677 | 0.7 | 0.296449 |
Target: 5'- uUCGGGUGGg--UGGGGGCCGuCGCCg -3' miRNA: 3'- uAGUCCGCUggaACUCCUGGC-GCGGg -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 12322 | 0.7 | 0.289331 |
Target: 5'- --gGGGCGACCgccgcuucGGGuGCCGCGCCg -3' miRNA: 3'- uagUCCGCUGGaac-----UCC-UGGCGCGGg -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 31869 | 0.7 | 0.282349 |
Target: 5'- -aCAGGC-ACCUgGGGGAgUGCGCaCCg -3' miRNA: 3'- uaGUCCGcUGGAaCUCCUgGCGCG-GG- -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 14686 | 0.71 | 0.262205 |
Target: 5'- -cCAGGCGACUUcgcGGGGaucGCCGCGUUCu -3' miRNA: 3'- uaGUCCGCUGGAa--CUCC---UGGCGCGGG- -5' |
|||||||
18084 | 3' | -59.6 | NC_004680.1 | + | 12047 | 0.71 | 0.235389 |
Target: 5'- -aCGGGCGcgguccucaaggucGCCUgaugGAGGACCGgggcaGCCCu -3' miRNA: 3'- uaGUCCGC--------------UGGAa---CUCCUGGCg----CGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home