miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18085 5' -64 NC_004680.1 + 53876 0.66 0.292651
Target:  5'- gGGCuGCACCu---GCC-UCGGuGCCGCa -3'
miRNA:   3'- aCCG-CGUGGccguCGGuAGCC-CGGCG- -5'
18085 5' -64 NC_004680.1 + 32385 0.66 0.292651
Target:  5'- cUGGUccGCGCCauuucguGCGGCCGUCgucgcugcGGGCgCGCa -3'
miRNA:   3'- -ACCG--CGUGGc------CGUCGGUAG--------CCCG-GCG- -5'
18085 5' -64 NC_004680.1 + 7442 0.66 0.292651
Target:  5'- cGGC-CACUugGuGCGGCaugUGGGCCGCu -3'
miRNA:   3'- aCCGcGUGG--C-CGUCGguaGCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 27869 0.67 0.285804
Target:  5'- gGGCGCgAUCGGCGcgaagcucGgCAUCGaaGGCUGCu -3'
miRNA:   3'- aCCGCG-UGGCCGU--------CgGUAGC--CCGGCG- -5'
18085 5' -64 NC_004680.1 + 17212 0.67 0.285804
Target:  5'- cGGUGCcCCGGUguGGCgcaAUCGGaGCgGCu -3'
miRNA:   3'- aCCGCGuGGCCG--UCGg--UAGCC-CGgCG- -5'
18085 5' -64 NC_004680.1 + 38591 0.67 0.279083
Target:  5'- gUGGCugGC-CCGGUuggagcggcaGGCCAUgucgaaugcucUGGGCCGUg -3'
miRNA:   3'- -ACCG--CGuGGCCG----------UCGGUA-----------GCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 22071 0.67 0.266021
Target:  5'- aUGcGUGguCCGGCGGCguUCGaGCCGg -3'
miRNA:   3'- -AC-CGCguGGCCGUCGguAGCcCGGCg -5'
18085 5' -64 NC_004680.1 + 48025 0.67 0.264105
Target:  5'- gUGGUGUugCGGCGGUCGUCguuucaugacgugaGGGUucgggaUGCg -3'
miRNA:   3'- -ACCGCGugGCCGUCGGUAG--------------CCCG------GCG- -5'
18085 5' -64 NC_004680.1 + 10994 0.67 0.253457
Target:  5'- aGGCGguCCuc--GCCGUCGGGCUGg -3'
miRNA:   3'- aCCGCguGGccguCGGUAGCCCGGCg -5'
18085 5' -64 NC_004680.1 + 5017 0.67 0.253457
Target:  5'- cGGCaGCGCCGcauacuCAGCCGgugugagaggcuUCGGGCCu- -3'
miRNA:   3'- aCCG-CGUGGCc-----GUCGGU------------AGCCCGGcg -5'
18085 5' -64 NC_004680.1 + 11873 0.67 0.252842
Target:  5'- cGGCGCcCCGgggagaGCGGUCAUgGacacaccGGCCGCa -3'
miRNA:   3'- aCCGCGuGGC------CGUCGGUAgC-------CCGGCG- -5'
18085 5' -64 NC_004680.1 + 11253 0.68 0.241386
Target:  5'- cGaCGCGCCaggaGGCGGCagaAUCGGGucacCCGCa -3'
miRNA:   3'- aCcGCGUGG----CCGUCGg--UAGCCC----GGCG- -5'
18085 5' -64 NC_004680.1 + 52644 0.68 0.241386
Target:  5'- gGaGCGCAgaaUCGGCgAGCUcgCGGGUaCGCg -3'
miRNA:   3'- aC-CGCGU---GGCCG-UCGGuaGCCCG-GCG- -5'
18085 5' -64 NC_004680.1 + 13454 0.68 0.240795
Target:  5'- aGGCGCACCGcaaGCA-CCGuuggagaUCGGGaaGCg -3'
miRNA:   3'- aCCGCGUGGC---CGUcGGU-------AGCCCggCG- -5'
18085 5' -64 NC_004680.1 + 33629 0.68 0.235532
Target:  5'- gGGCGCccgucaggaaACCGGCGGCgAUCcGcaCCGCa -3'
miRNA:   3'- aCCGCG----------UGGCCGUCGgUAG-CccGGCG- -5'
18085 5' -64 NC_004680.1 + 12622 0.68 0.230366
Target:  5'- aUGGCGCuggacgcgauggcacCCGGCGcUgGUCaGGCCGCg -3'
miRNA:   3'- -ACCGCGu--------------GGCCGUcGgUAGcCCGGCG- -5'
18085 5' -64 NC_004680.1 + 3290 0.68 0.229797
Target:  5'- cGGCaucaGCAUCGGCAGCggaGUCuuGGUCGCc -3'
miRNA:   3'- aCCG----CGUGGCCGUCGg--UAGc-CCGGCG- -5'
18085 5' -64 NC_004680.1 + 5447 0.68 0.229797
Target:  5'- cGGUGU--CGGUGGCCA--GGGCCGUg -3'
miRNA:   3'- aCCGCGugGCCGUCGGUagCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 18110 0.68 0.229797
Target:  5'- gUGG-GUACCGGCGcGCCgAUCcGGuuGCa -3'
miRNA:   3'- -ACCgCGUGGCCGU-CGG-UAGcCCggCG- -5'
18085 5' -64 NC_004680.1 + 11100 0.68 0.2281
Target:  5'- cGGgGgGCCGGCuggcccgauggggaGGCCGguaucaGGGUCGCu -3'
miRNA:   3'- aCCgCgUGGCCG--------------UCGGUag----CCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.