miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18086 3' -56.6 NC_004680.1 + 11190 0.66 0.705889
Target:  5'- --aCGGCCgcggcguucugCUUGGGCGCCGGggcCGCc- -3'
miRNA:   3'- guaGUUGG-----------GAACCCGCGGCUa--GCGcc -5'
18086 3' -56.6 NC_004680.1 + 24031 0.66 0.695315
Target:  5'- gAUCAGC----GGGUGCCGGUCGaUGGu -3'
miRNA:   3'- gUAGUUGggaaCCCGCGGCUAGC-GCC- -5'
18086 3' -56.6 NC_004680.1 + 40243 0.66 0.695315
Target:  5'- gGUCAGCCa-UGGGgGC--GUUGCGGg -3'
miRNA:   3'- gUAGUUGGgaACCCgCGgcUAGCGCC- -5'
18086 3' -56.6 NC_004680.1 + 15289 0.66 0.695315
Target:  5'- --gCGAUCUUcgugUGGGCGCUGcaaaccGUCGUGGa -3'
miRNA:   3'- guaGUUGGGA----ACCCGCGGC------UAGCGCC- -5'
18086 3' -56.6 NC_004680.1 + 27697 0.66 0.684682
Target:  5'- gCGUCAACCaUUGGGCgGCUG---GCGGc -3'
miRNA:   3'- -GUAGUUGGgAACCCG-CGGCuagCGCC- -5'
18086 3' -56.6 NC_004680.1 + 57542 0.66 0.652536
Target:  5'- aCAUCAGCgguggUUUGGGUGgCGG-CGCGGu -3'
miRNA:   3'- -GUAGUUGg----GAACCCGCgGCUaGCGCC- -5'
18086 3' -56.6 NC_004680.1 + 23583 0.67 0.630999
Target:  5'- -uUCGugCCU--GGUGCCGAgggguUUGCGGg -3'
miRNA:   3'- guAGUugGGAacCCGCGGCU-----AGCGCC- -5'
18086 3' -56.6 NC_004680.1 + 19341 0.67 0.598721
Target:  5'- aCAUCGACCCgguuGCgGUCGGUgGCGGu -3'
miRNA:   3'- -GUAGUUGGGaaccCG-CGGCUAgCGCC- -5'
18086 3' -56.6 NC_004680.1 + 21144 0.67 0.598721
Target:  5'- gGUauACCCgcauUUGGGUGCgGGUgGCGGa -3'
miRNA:   3'- gUAguUGGG----AACCCGCGgCUAgCGCC- -5'
18086 3' -56.6 NC_004680.1 + 56474 0.67 0.598721
Target:  5'- aCGUCugcGCCgCUguugGuGGCGUCGAggagCGCGGa -3'
miRNA:   3'- -GUAGu--UGG-GAa---C-CCGCGGCUa---GCGCC- -5'
18086 3' -56.6 NC_004680.1 + 12958 0.68 0.577325
Target:  5'- ------gCCUUGGGCGgCGGcUUGCGGg -3'
miRNA:   3'- guaguugGGAACCCGCgGCU-AGCGCC- -5'
18086 3' -56.6 NC_004680.1 + 29099 0.68 0.566688
Target:  5'- gGUCAACCgCgcccGCGCCGAguguggcgaUCGCGGu -3'
miRNA:   3'- gUAGUUGG-GaaccCGCGGCU---------AGCGCC- -5'
18086 3' -56.6 NC_004680.1 + 42462 0.68 0.545573
Target:  5'- --cCAACCC-UGGccgcggaaauGCGCCGAgaUCGUGGc -3'
miRNA:   3'- guaGUUGGGaACC----------CGCGGCU--AGCGCC- -5'
18086 3' -56.6 NC_004680.1 + 34477 0.68 0.53511
Target:  5'- aCAUcCAACCCgauGGUGUCGcGUCGUGGa -3'
miRNA:   3'- -GUA-GUUGGGaacCCGCGGC-UAGCGCC- -5'
18086 3' -56.6 NC_004680.1 + 34556 0.69 0.524718
Target:  5'- cCGUCugcgccGCCCauguugUGGGUGCCG-UCGcCGGg -3'
miRNA:   3'- -GUAGu-----UGGGa-----ACCCGCGGCuAGC-GCC- -5'
18086 3' -56.6 NC_004680.1 + 24418 0.69 0.503155
Target:  5'- aCGUCAaccucaccaacgaGCCCguaccagUGGGCGCCucgGGUUGCuGGg -3'
miRNA:   3'- -GUAGU-------------UGGGa------ACCCGCGG---CUAGCG-CC- -5'
18086 3' -56.6 NC_004680.1 + 27439 0.69 0.483984
Target:  5'- gCAUCAACCUgugcuucgccGGGUcccgcgcuGCCuGGUCGCGGg -3'
miRNA:   3'- -GUAGUUGGGaa--------CCCG--------CGG-CUAGCGCC- -5'
18086 3' -56.6 NC_004680.1 + 5632 0.71 0.389603
Target:  5'- cCAUCGggaACCUgcUGGGUGCUcgGAUCGUGGa -3'
miRNA:   3'- -GUAGU---UGGGa-ACCCGCGG--CUAGCGCC- -5'
18086 3' -56.6 NC_004680.1 + 18835 0.73 0.300709
Target:  5'- aGUCGauGCCCcUGGGCGUgGuGUCGUGGa -3'
miRNA:   3'- gUAGU--UGGGaACCCGCGgC-UAGCGCC- -5'
18086 3' -56.6 NC_004680.1 + 12800 1.09 0.000883
Target:  5'- cCAUCAACCCUUGGGCGCCGAUCGCGGc -3'
miRNA:   3'- -GUAGUUGGGAACCCGCGGCUAGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.