miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18086 5' -55.7 NC_004680.1 + 19502 0.66 0.733294
Target:  5'- gGUgGUG-UUGGUGGCCCGGgUGAc- -3'
miRNA:   3'- gCGgCAUgAGCUACCGGGCCaACUag -5'
18086 5' -55.7 NC_004680.1 + 12625 0.66 0.701622
Target:  5'- gCGCUGgACgCGAUGGCacCCGGcgcUGGUCa -3'
miRNA:   3'- -GCGGCaUGaGCUACCG--GGCCa--ACUAG- -5'
18086 5' -55.7 NC_004680.1 + 24904 0.67 0.680158
Target:  5'- cCGCCGgcggUGGUGGCgguuCCGGUUcaGAUCa -3'
miRNA:   3'- -GCGGCaugaGCUACCG----GGCCAA--CUAG- -5'
18086 5' -55.7 NC_004680.1 + 40515 0.67 0.680158
Target:  5'- aCGCCGgaucggACUCGAUguagaucacaucGGCgCGGUccgcuagggccUGGUCa -3'
miRNA:   3'- -GCGGCa-----UGAGCUA------------CCGgGCCA-----------ACUAG- -5'
18086 5' -55.7 NC_004680.1 + 29011 0.67 0.680158
Target:  5'- uCGCCacACUCGGcgcgGGCgCGGUUGAc- -3'
miRNA:   3'- -GCGGcaUGAGCUa---CCGgGCCAACUag -5'
18086 5' -55.7 NC_004680.1 + 16431 0.67 0.669354
Target:  5'- gGCCGUAagUCGGaGGCCCcGUUGGc- -3'
miRNA:   3'- gCGGCAUg-AGCUaCCGGGcCAACUag -5'
18086 5' -55.7 NC_004680.1 + 24041 0.68 0.604162
Target:  5'- uGCCGg--UCGAUGGUUCGGUgacGUCg -3'
miRNA:   3'- gCGGCaugAGCUACCGGGCCAac-UAG- -5'
18086 5' -55.7 NC_004680.1 + 13322 0.68 0.571755
Target:  5'- uGCCGUcUUCGGUGGCgCCcuuUUGGUCg -3'
miRNA:   3'- gCGGCAuGAGCUACCG-GGcc-AACUAG- -5'
18086 5' -55.7 NC_004680.1 + 47224 0.69 0.539781
Target:  5'- aGUCGUACgguccgggCGGUGGCUCGGgcgGAa- -3'
miRNA:   3'- gCGGCAUGa-------GCUACCGGGCCaa-CUag -5'
18086 5' -55.7 NC_004680.1 + 12543 0.7 0.467899
Target:  5'- -aCCGUAUUCGGguucaGGCuCCGGUggGAUCg -3'
miRNA:   3'- gcGGCAUGAGCUa----CCG-GGCCAa-CUAG- -5'
18086 5' -55.7 NC_004680.1 + 9357 0.71 0.448263
Target:  5'- aGCCGUucGCUuuUGA-GGaUCCGGUUGAUCg -3'
miRNA:   3'- gCGGCA--UGA--GCUaCC-GGGCCAACUAG- -5'
18086 5' -55.7 NC_004680.1 + 38576 0.71 0.429091
Target:  5'- uGCUGUGgUgGAuccguggcUGGCCCGGUUGGa- -3'
miRNA:   3'- gCGGCAUgAgCU--------ACCGGGCCAACUag -5'
18086 5' -55.7 NC_004680.1 + 7984 0.72 0.35752
Target:  5'- aGUCGUACUCGGUGcgguucguggcGCUCGGUacugcUGAUCc -3'
miRNA:   3'- gCGGCAUGAGCUAC-----------CGGGCCA-----ACUAG- -5'
18086 5' -55.7 NC_004680.1 + 18144 0.74 0.273524
Target:  5'- uGCCGUACaUCGAUGGuguugcgcagucCCCGGUgGAUUu -3'
miRNA:   3'- gCGGCAUG-AGCUACC------------GGGCCAaCUAG- -5'
18086 5' -55.7 NC_004680.1 + 12765 1.1 0.000837
Target:  5'- cCGCCGUACUCGAUGGCCCGGUUGAUCa -3'
miRNA:   3'- -GCGGCAUGAGCUACCGGGCCAACUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.