miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18087 3' -57.9 NC_004680.1 + 18844 0.66 0.608748
Target:  5'- cCCuGggCGUGGUGucguggaucggcuacGGCGUGGCGGGg -3'
miRNA:   3'- uGGuCuaGCGCCAU---------------CUGCGCCGCUCa -5'
18087 3' -57.9 NC_004680.1 + 4195 0.66 0.593749
Target:  5'- gACCAGGugaaggcguUCGCGGacaucgcAGAcCGCGGCGGa- -3'
miRNA:   3'- -UGGUCU---------AGCGCCa------UCU-GCGCCGCUca -5'
18087 3' -57.9 NC_004680.1 + 12303 0.66 0.589473
Target:  5'- cACCGGAaccgcUCGCGGggaacgcugccgcGGACGgGGCGGc- -3'
miRNA:   3'- -UGGUCU-----AGCGCCa------------UCUGCgCCGCUca -5'
18087 3' -57.9 NC_004680.1 + 1630 0.66 0.583071
Target:  5'- -aCGGGUCGCGGUGGAgaGauGCGAc- -3'
miRNA:   3'- ugGUCUAGCGCCAUCUg-CgcCGCUca -5'
18087 3' -57.9 NC_004680.1 + 9216 0.66 0.583071
Target:  5'- cGCCGGucaauggCGCGGUGG-CGCGugcuguucGCGGGg -3'
miRNA:   3'- -UGGUCua-----GCGCCAUCuGCGC--------CGCUCa -5'
18087 3' -57.9 NC_004680.1 + 57919 0.67 0.561839
Target:  5'- cACCGGAUagGUGGUAGAgGUGGaagcCGGGg -3'
miRNA:   3'- -UGGUCUAg-CGCCAUCUgCGCC----GCUCa -5'
18087 3' -57.9 NC_004680.1 + 17963 0.67 0.530413
Target:  5'- uCCAGcggCGaUGGUacGGGCGCGGCGAa- -3'
miRNA:   3'- uGGUCua-GC-GCCA--UCUGCGCCGCUca -5'
18087 3' -57.9 NC_004680.1 + 43429 0.68 0.479588
Target:  5'- cACUAGGUCGCGGagggAGGCGUcGUGAuGUg -3'
miRNA:   3'- -UGGUCUAGCGCCa---UCUGCGcCGCU-CA- -5'
18087 3' -57.9 NC_004680.1 + 1863 0.68 0.469705
Target:  5'- gAUCGGGUUGUGGagugggcuguUGGugGCGGCGGc- -3'
miRNA:   3'- -UGGUCUAGCGCC----------AUCugCGCCGCUca -5'
18087 3' -57.9 NC_004680.1 + 16911 0.68 0.459928
Target:  5'- cGCCAGG-CGUGGaAGugGaCGGCGGuGUg -3'
miRNA:   3'- -UGGUCUaGCGCCaUCugC-GCCGCU-CA- -5'
18087 3' -57.9 NC_004680.1 + 12429 0.69 0.440704
Target:  5'- cACCAGA-CGCGGgacuccccGGCGCGGCa--- -3'
miRNA:   3'- -UGGUCUaGCGCCau------CUGCGCCGcuca -5'
18087 3' -57.9 NC_004680.1 + 27846 0.69 0.421944
Target:  5'- gGCCGGAcgGUGGUGGACGCGcUGGGc -3'
miRNA:   3'- -UGGUCUagCGCCAUCUGCGCcGCUCa -5'
18087 3' -57.9 NC_004680.1 + 21313 0.69 0.412746
Target:  5'- gGCCAcGGuguUCGCGGUGGugGCGugggaccgcGCGGGc -3'
miRNA:   3'- -UGGU-CU---AGCGCCAUCugCGC---------CGCUCa -5'
18087 3' -57.9 NC_004680.1 + 25348 0.7 0.385036
Target:  5'- cGCCAGuUCggcgucaagcucgGCGGUAGuCGCGGCGcGUu -3'
miRNA:   3'- -UGGUCuAG-------------CGCCAUCuGCGCCGCuCA- -5'
18087 3' -57.9 NC_004680.1 + 2683 0.7 0.35197
Target:  5'- gAUCAGGUCcgcuauGCGGUGGugGCGGgaccucgaugcCGAGUc -3'
miRNA:   3'- -UGGUCUAG------CGCCAUCugCGCC-----------GCUCA- -5'
18087 3' -57.9 NC_004680.1 + 57549 0.7 0.343822
Target:  5'- cACCAGAacaUCaGCGGUgguuugGGugGCGGCGcGGUu -3'
miRNA:   3'- -UGGUCU---AG-CGCCA------UCugCGCCGC-UCA- -5'
18087 3' -57.9 NC_004680.1 + 19583 0.71 0.3126
Target:  5'- uCCAuuGUCGCugaGGgcGGCGCGGCGGGUa -3'
miRNA:   3'- uGGUc-UAGCG---CCauCUGCGCCGCUCA- -5'
18087 3' -57.9 NC_004680.1 + 19346 0.72 0.283577
Target:  5'- gACCcGGUUGCGGUcGGugGCGGUG-GUg -3'
miRNA:   3'- -UGGuCUAGCGCCA-UCugCGCCGCuCA- -5'
18087 3' -57.9 NC_004680.1 + 24532 0.75 0.169624
Target:  5'- gAUCAGGagGCGGUGGugGCGGUGGc- -3'
miRNA:   3'- -UGGUCUagCGCCAUCugCGCCGCUca -5'
18087 3' -57.9 NC_004680.1 + 13426 1.06 0.000993
Target:  5'- gACCAGAUCGCGGUAGACGCGGCGAGUc -3'
miRNA:   3'- -UGGUCUAGCGCCAUCUGCGCCGCUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.