miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18087 5' -59.2 NC_004680.1 + 21419 0.66 0.541797
Target:  5'- gGGGCUGaGCCcgcGCGGUc--CCACGCCa- -3'
miRNA:   3'- -CCUGGC-CGG---CGCCGuaaGGUGUGGau -5'
18087 5' -59.2 NC_004680.1 + 42117 0.66 0.541797
Target:  5'- uGACCGGCCGUG----UCCugACCc- -3'
miRNA:   3'- cCUGGCCGGCGCcguaAGGugUGGau -5'
18087 5' -59.2 NC_004680.1 + 40415 0.66 0.531424
Target:  5'- cGGACCGcGCCGauGUgaUCUACAUCg- -3'
miRNA:   3'- -CCUGGC-CGGCgcCGuaAGGUGUGGau -5'
18087 5' -59.2 NC_004680.1 + 24267 0.66 0.500764
Target:  5'- -uGCCGGUCGCGGUGccggacUUuuGCACCg- -3'
miRNA:   3'- ccUGGCCGGCGCCGU------AAggUGUGGau -5'
18087 5' -59.2 NC_004680.1 + 30030 0.66 0.500764
Target:  5'- uGGACgcaaaCGGUuccUGCGGCGcgUCCACAaCCUGc -3'
miRNA:   3'- -CCUG-----GCCG---GCGCCGUa-AGGUGU-GGAU- -5'
18087 5' -59.2 NC_004680.1 + 54055 0.66 0.500764
Target:  5'- aGGA-CGGCCGCGaGUA--CUACGCCg- -3'
miRNA:   3'- -CCUgGCCGGCGC-CGUaaGGUGUGGau -5'
18087 5' -59.2 NC_004680.1 + 10005 0.66 0.490717
Target:  5'- gGGACCGGUCGggcCGGCAUcgacgUCGCuGCCg- -3'
miRNA:   3'- -CCUGGCCGGC---GCCGUAa----GGUG-UGGau -5'
18087 5' -59.2 NC_004680.1 + 28254 0.66 0.490717
Target:  5'- cGACCGGCCGCGGaagguagcCCAUgacguACUUGg -3'
miRNA:   3'- cCUGGCCGGCGCCguaa----GGUG-----UGGAU- -5'
18087 5' -59.2 NC_004680.1 + 32028 0.66 0.490717
Target:  5'- cGACCGuGCCGCGGaCAUccuccgggguaUUCACGCg-- -3'
miRNA:   3'- cCUGGC-CGGCGCC-GUA-----------AGGUGUGgau -5'
18087 5' -59.2 NC_004680.1 + 41340 0.67 0.480764
Target:  5'- -cAUCGGCCcCGGCcucgCCGCACCa- -3'
miRNA:   3'- ccUGGCCGGcGCCGuaa-GGUGUGGau -5'
18087 5' -59.2 NC_004680.1 + 55513 0.67 0.46116
Target:  5'- uGAUC-GCCGCGGCGagugcUUCCGCgACCa- -3'
miRNA:   3'- cCUGGcCGGCGCCGU-----AAGGUG-UGGau -5'
18087 5' -59.2 NC_004680.1 + 12461 0.67 0.432571
Target:  5'- cGGAgCCGGaCC-CGGCAguggacCCGCGCCa- -3'
miRNA:   3'- -CCU-GGCC-GGcGCCGUaa----GGUGUGGau -5'
18087 5' -59.2 NC_004680.1 + 47845 0.68 0.423272
Target:  5'- cGGCUGGCUGCGGCGg--UugGCCg- -3'
miRNA:   3'- cCUGGCCGGCGCCGUaagGugUGGau -5'
18087 5' -59.2 NC_004680.1 + 50249 0.68 0.414095
Target:  5'- aGGACCGGCC-CGGUGcgaCCGCgACCc- -3'
miRNA:   3'- -CCUGGCCGGcGCCGUaa-GGUG-UGGau -5'
18087 5' -59.2 NC_004680.1 + 5438 0.68 0.405041
Target:  5'- uGGCCagGGCCGUGGCAc-CCGCACg-- -3'
miRNA:   3'- cCUGG--CCGGCGCCGUaaGGUGUGgau -5'
18087 5' -59.2 NC_004680.1 + 15187 0.68 0.396113
Target:  5'- uGGACCGGCaccgcugaacugCGCGGUAU-CCGCGacauCCUc -3'
miRNA:   3'- -CCUGGCCG------------GCGCCGUAaGGUGU----GGAu -5'
18087 5' -59.2 NC_004680.1 + 21133 0.68 0.387313
Target:  5'- --cCCGGCCGCGGgGUauacCCGCAUUUGg -3'
miRNA:   3'- ccuGGCCGGCGCCgUAa---GGUGUGGAU- -5'
18087 5' -59.2 NC_004680.1 + 51807 0.68 0.387313
Target:  5'- -uGCgGGCCGCGGUGUUCgCAauaGCCa- -3'
miRNA:   3'- ccUGgCCGGCGCCGUAAG-GUg--UGGau -5'
18087 5' -59.2 NC_004680.1 + 42678 0.68 0.385569
Target:  5'- uGGGCUucGCCGCGGCugaugccgugCCGCACCc- -3'
miRNA:   3'- -CCUGGc-CGGCGCCGuaa-------GGUGUGGau -5'
18087 5' -59.2 NC_004680.1 + 13649 0.69 0.345286
Target:  5'- aGGuGCCGGCgGCGGauacaUCUACGCCa- -3'
miRNA:   3'- -CC-UGGCCGgCGCCgua--AGGUGUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.