Results 1 - 20 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 5438 | 0.68 | 0.405041 |
Target: 5'- uGGCCagGGCCGUGGCAc-CCGCACg-- -3' miRNA: 3'- cCUGG--CCGGCGCCGUaaGGUGUGgau -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 10005 | 0.66 | 0.490717 |
Target: 5'- gGGACCGGUCGggcCGGCAUcgacgUCGCuGCCg- -3' miRNA: 3'- -CCUGGCCGGC---GCCGUAa----GGUG-UGGau -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 11193 | 0.76 | 0.127275 |
Target: 5'- cGAaCGGCCGCGGCGUUCUgcuuggGCGCCg- -3' miRNA: 3'- cCUgGCCGGCGCCGUAAGG------UGUGGau -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 12461 | 0.67 | 0.432571 |
Target: 5'- cGGAgCCGGaCC-CGGCAguggacCCGCGCCa- -3' miRNA: 3'- -CCU-GGCC-GGcGCCGUaa----GGUGUGGau -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 13391 | 1.08 | 0.00054 |
Target: 5'- gGGACCGGCCGCGGCAUUCCACACCUAc -3' miRNA: 3'- -CCUGGCCGGCGCCGUAAGGUGUGGAU- -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 13649 | 0.69 | 0.345286 |
Target: 5'- aGGuGCCGGCgGCGGauacaUCUACGCCa- -3' miRNA: 3'- -CC-UGGCCGgCGCCgua--AGGUGUGGau -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 15187 | 0.68 | 0.396113 |
Target: 5'- uGGACCGGCaccgcugaacugCGCGGUAU-CCGCGacauCCUc -3' miRNA: 3'- -CCUGGCCG------------GCGCCGUAaGGUGU----GGAu -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 21133 | 0.68 | 0.387313 |
Target: 5'- --cCCGGCCGCGGgGUauacCCGCAUUUGg -3' miRNA: 3'- ccuGGCCGGCGCCgUAa---GGUGUGGAU- -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 21419 | 0.66 | 0.541797 |
Target: 5'- gGGGCUGaGCCcgcGCGGUc--CCACGCCa- -3' miRNA: 3'- -CCUGGC-CGG---CGCCGuaaGGUGUGGau -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 24267 | 0.66 | 0.500764 |
Target: 5'- -uGCCGGUCGCGGUGccggacUUuuGCACCg- -3' miRNA: 3'- ccUGGCCGGCGCCGU------AAggUGUGGau -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 28254 | 0.66 | 0.490717 |
Target: 5'- cGACCGGCCGCGGaagguagcCCAUgacguACUUGg -3' miRNA: 3'- cCUGGCCGGCGCCguaa----GGUG-----UGGAU- -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 29198 | 0.81 | 0.050769 |
Target: 5'- cGGGgUuGCCGCGGCGUUCCGCGCCg- -3' miRNA: 3'- -CCUgGcCGGCGCCGUAAGGUGUGGau -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 29281 | 0.74 | 0.170972 |
Target: 5'- cGGGCUGGUaCGCGGCAU-CCAUugCUu -3' miRNA: 3'- -CCUGGCCG-GCGCCGUAaGGUGugGAu -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 30030 | 0.66 | 0.500764 |
Target: 5'- uGGACgcaaaCGGUuccUGCGGCGcgUCCACAaCCUGc -3' miRNA: 3'- -CCUG-----GCCG---GCGCCGUa-AGGUGU-GGAU- -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 32028 | 0.66 | 0.490717 |
Target: 5'- cGACCGuGCCGCGGaCAUccuccgggguaUUCACGCg-- -3' miRNA: 3'- cCUGGC-CGGCGCC-GUA-----------AGGUGUGgau -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 40415 | 0.66 | 0.531424 |
Target: 5'- cGGACCGcGCCGauGUgaUCUACAUCg- -3' miRNA: 3'- -CCUGGC-CGGCgcCGuaAGGUGUGGau -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 40951 | 0.69 | 0.329416 |
Target: 5'- cGGACUGGCgcgacUGCGGCAaaggUCUGCACUUc -3' miRNA: 3'- -CCUGGCCG-----GCGCCGUa---AGGUGUGGAu -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 41340 | 0.67 | 0.480764 |
Target: 5'- -cAUCGGCCcCGGCcucgCCGCACCa- -3' miRNA: 3'- ccUGGCCGGcGCCGuaa-GGUGUGGau -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 42117 | 0.66 | 0.541797 |
Target: 5'- uGACCGGCCGUG----UCCugACCc- -3' miRNA: 3'- cCUGGCCGGCGCcguaAGGugUGGau -5' |
|||||||
18087 | 5' | -59.2 | NC_004680.1 | + | 42678 | 0.68 | 0.385569 |
Target: 5'- uGGGCUucGCCGCGGCugaugccgugCCGCACCc- -3' miRNA: 3'- -CCUGGc-CGGCGCCGuaa-------GGUGUGGau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home