miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18088 3' -52 NC_004680.1 + 12764 0.66 0.893098
Target:  5'- --cGCCGuACUCGAUGgCCCGGUuGa -3'
miRNA:   3'- guaUGGUuUGGGCUACgGGGCUAuCa -5'
18088 3' -52 NC_004680.1 + 17874 0.66 0.885654
Target:  5'- --aAUCAGACgCCGAacauucugccUGCCCCGA-AGUu -3'
miRNA:   3'- guaUGGUUUG-GGCU----------ACGGGGCUaUCA- -5'
18088 3' -52 NC_004680.1 + 46174 0.66 0.885654
Target:  5'- aAUGCCGAACCCGGcuggguguagaUGCggaugacaugaCCCGGUAc- -3'
miRNA:   3'- gUAUGGUUUGGGCU-----------ACG-----------GGGCUAUca -5'
18088 3' -52 NC_004680.1 + 45243 0.66 0.869959
Target:  5'- --cGCCgAGACCaCGggGCCUgCGAUGGUg -3'
miRNA:   3'- guaUGG-UUUGG-GCuaCGGG-GCUAUCA- -5'
18088 3' -52 NC_004680.1 + 30211 0.67 0.835543
Target:  5'- ---uUCAAAUCCGGUGCCCCa----- -3'
miRNA:   3'- guauGGUUUGGGCUACGGGGcuauca -5'
18088 3' -52 NC_004680.1 + 28758 0.67 0.816958
Target:  5'- --cACCGGACCCGAUucgcuacucGCCCaaGUGGUc -3'
miRNA:   3'- guaUGGUUUGGGCUA---------CGGGgcUAUCA- -5'
18088 3' -52 NC_004680.1 + 25748 0.68 0.767147
Target:  5'- --gGCCGGugCCGGUGCCgUGGUuGUc -3'
miRNA:   3'- guaUGGUUugGGCUACGGgGCUAuCA- -5'
18088 3' -52 NC_004680.1 + 15485 0.69 0.746124
Target:  5'- gGUGCCGAACC--AUGCCCgGAUAu- -3'
miRNA:   3'- gUAUGGUUUGGgcUACGGGgCUAUca -5'
18088 3' -52 NC_004680.1 + 26870 0.72 0.535554
Target:  5'- --cGCCGAugCCGGUGCCgaccUCGGUGGa -3'
miRNA:   3'- guaUGGUUugGGCUACGG----GGCUAUCa -5'
18088 3' -52 NC_004680.1 + 38788 0.72 0.535554
Target:  5'- -cUGCCgAAACCCGAUGCCCgacaGAcGGUu -3'
miRNA:   3'- guAUGG-UUUGGGCUACGGGg---CUaUCA- -5'
18088 3' -52 NC_004680.1 + 6104 0.79 0.231301
Target:  5'- --cGCCcgcACCCGAgugGCCCCGGUGGUg -3'
miRNA:   3'- guaUGGuu-UGGGCUa--CGGGGCUAUCA- -5'
18088 3' -52 NC_004680.1 + 14209 1.07 0.003217
Target:  5'- gCAUACCAAACCCGAUGCCCCGAUAGUc -3'
miRNA:   3'- -GUAUGGUUUGGGCUACGGGGCUAUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.