Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18088 | 5' | -53 | NC_004680.1 | + | 25748 | 0.66 | 0.855355 |
Target: 5'- ----gGCCGGUGCCGGUg-CC--GUGg -3' miRNA: 3'- agugaUGGCCACGGCCAaaGGaaCAC- -5' |
|||||||
18088 | 5' | -53 | NC_004680.1 | + | 56078 | 0.66 | 0.837962 |
Target: 5'- uUUGCguucUCGGUGCCGGUUUCg--GUGc -3' miRNA: 3'- -AGUGau--GGCCACGGCCAAAGgaaCAC- -5' |
|||||||
18088 | 5' | -53 | NC_004680.1 | + | 26872 | 0.68 | 0.749932 |
Target: 5'- aUCGCcgaUGCCGGUGCCGa---CCUcgGUGg -3' miRNA: 3'- -AGUG---AUGGCCACGGCcaaaGGAa-CAC- -5' |
|||||||
18088 | 5' | -53 | NC_004680.1 | + | 24306 | 0.68 | 0.749932 |
Target: 5'- cCGCcgUGCCGGUGCCGGgaagg--GUGg -3' miRNA: 3'- aGUG--AUGGCCACGGCCaaaggaaCAC- -5' |
|||||||
18088 | 5' | -53 | NC_004680.1 | + | 11765 | 0.68 | 0.717968 |
Target: 5'- cCGuCUGCCGGUgcgGCCGGUgugUCCaUGa- -3' miRNA: 3'- aGU-GAUGGCCA---CGGCCAa--AGGaACac -5' |
|||||||
18088 | 5' | -53 | NC_004680.1 | + | 16869 | 0.7 | 0.596407 |
Target: 5'- aCGCUuccGCCGGUGUCGGgucgUCCggGUc -3' miRNA: 3'- aGUGA---UGGCCACGGCCaa--AGGaaCAc -5' |
|||||||
18088 | 5' | -53 | NC_004680.1 | + | 14172 | 1.08 | 0.002069 |
Target: 5'- uUCACUACCGGUGCCGGUUUCCUUGUGc -3' miRNA: 3'- -AGUGAUGGCCACGGCCAAAGGAACAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home