miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18089 3' -54.4 NC_004680.1 + 13134 0.66 0.784056
Target:  5'- --uUCCacaUGAUgGGCGGCCUG-GCGGUc -3'
miRNA:   3'- ugcAGGa--ACUA-CUGCCGGACuUGCCA- -5'
18089 3' -54.4 NC_004680.1 + 20454 0.67 0.743247
Target:  5'- ---cCCUUGucGACGGCCUGGaagaacgcgaucGCGGUg -3'
miRNA:   3'- ugcaGGAACuaCUGCCGGACU------------UGCCA- -5'
18089 3' -54.4 NC_004680.1 + 57670 0.67 0.722121
Target:  5'- -aGUCUUguucGGUGAUGGCCaUGAACcGGg -3'
miRNA:   3'- ugCAGGAa---CUACUGCCGG-ACUUG-CCa -5'
18089 3' -54.4 NC_004680.1 + 7666 0.67 0.700636
Target:  5'- cCGUUCaucGAgcgUGGCGGCCUGcaGGCGGUg -3'
miRNA:   3'- uGCAGGaa-CU---ACUGCCGGAC--UUGCCA- -5'
18089 3' -54.4 NC_004680.1 + 49940 0.68 0.678884
Target:  5'- aACGUCCgccGAUGuCGGCgCUGAACc-- -3'
miRNA:   3'- -UGCAGGaa-CUACuGCCG-GACUUGcca -5'
18089 3' -54.4 NC_004680.1 + 46347 0.69 0.612897
Target:  5'- aACGUgCgaacGAaGACGGCCcGGGCGGUg -3'
miRNA:   3'- -UGCAgGaa--CUaCUGCCGGaCUUGCCA- -5'
18089 3' -54.4 NC_004680.1 + 37954 0.7 0.569103
Target:  5'- aGCGUC--UGcgGGCGGCCaucGAACGGg -3'
miRNA:   3'- -UGCAGgaACuaCUGCCGGa--CUUGCCa -5'
18089 3' -54.4 NC_004680.1 + 26235 0.7 0.568016
Target:  5'- uGCGgCCUUGGUcgucagaGACGGUgaGGACGGUu -3'
miRNA:   3'- -UGCaGGAACUA-------CUGCCGgaCUUGCCA- -5'
18089 3' -54.4 NC_004680.1 + 11084 0.71 0.505089
Target:  5'- gGCGgCCUUGGUGGCGGCCccGGCGc- -3'
miRNA:   3'- -UGCaGGAACUACUGCCGGacUUGCca -5'
18089 3' -54.4 NC_004680.1 + 8905 0.71 0.488525
Target:  5'- cCGUCCUUGAaauacGGCGGCCccuugaccgcgccgGGACGGg -3'
miRNA:   3'- uGCAGGAACUa----CUGCCGGa-------------CUUGCCa -5'
18089 3' -54.4 NC_004680.1 + 59081 0.75 0.31267
Target:  5'- uGCGUCCUUGGUGGuuGCCccAGCGGUg -3'
miRNA:   3'- -UGCAGGAACUACUgcCGGacUUGCCA- -5'
18089 3' -54.4 NC_004680.1 + 15646 1.06 0.00204
Target:  5'- aACGUCCUUGAUGACGGCCUGAACGGUu -3'
miRNA:   3'- -UGCAGGAACUACUGCCGGACUUGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.