miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18089 5' -59.4 NC_004680.1 + 25330 0.66 0.526775
Target:  5'- cGC-CUcGUaGacgaGGGCCGCCAguUCGGCGuCa -3'
miRNA:   3'- -CGuGA-CA-Cg---CCCGGUGGU--AGCCGCuG- -5'
18089 5' -59.4 NC_004680.1 + 37942 0.66 0.516531
Target:  5'- uCACUGagguugagcgucUGCGGGCgGCCAUCgaacgGGCucgGGCg -3'
miRNA:   3'- cGUGAC------------ACGCCCGgUGGUAG-----CCG---CUG- -5'
18089 5' -59.4 NC_004680.1 + 49388 0.66 0.506368
Target:  5'- aGCGCcGuUGCuuGGCUGCgAUUGGCGGCg -3'
miRNA:   3'- -CGUGaC-ACGc-CCGGUGgUAGCCGCUG- -5'
18089 5' -59.4 NC_004680.1 + 34452 0.66 0.506368
Target:  5'- cGCGgaGUGUuucGCCGCCGcgguagUCGGCGAUg -3'
miRNA:   3'- -CGUgaCACGcc-CGGUGGU------AGCCGCUG- -5'
18089 5' -59.4 NC_004680.1 + 19440 0.66 0.486305
Target:  5'- cCACauggGUGCGcGGUgAgCAuuUCGGCGACa -3'
miRNA:   3'- cGUGa---CACGC-CCGgUgGU--AGCCGCUG- -5'
18089 5' -59.4 NC_004680.1 + 42736 0.66 0.486305
Target:  5'- gGCGCcGUcgucgagcagGCGGGCCGCC-UgGGCcagGACa -3'
miRNA:   3'- -CGUGaCA----------CGCCCGGUGGuAgCCG---CUG- -5'
18089 5' -59.4 NC_004680.1 + 23437 0.67 0.476416
Target:  5'- gGCACgcugaucGUGCaGGCCGCCcgC-GUGACu -3'
miRNA:   3'- -CGUGa------CACGcCCGGUGGuaGcCGCUG- -5'
18089 5' -59.4 NC_004680.1 + 19247 0.67 0.456945
Target:  5'- -gACg--GCGGGCUAUC--CGGCGACg -3'
miRNA:   3'- cgUGacaCGCCCGGUGGuaGCCGCUG- -5'
18089 5' -59.4 NC_004680.1 + 42290 0.67 0.44737
Target:  5'- uGCACgGUGCGGugguggcaGCCcaGCUGUuCGGCGAUc -3'
miRNA:   3'- -CGUGaCACGCC--------CGG--UGGUA-GCCGCUG- -5'
18089 5' -59.4 NC_004680.1 + 11069 0.67 0.44737
Target:  5'- gGCAucCUGcUGcCGGGCgGCC-UUGGUGGCg -3'
miRNA:   3'- -CGU--GAC-AC-GCCCGgUGGuAGCCGCUG- -5'
18089 5' -59.4 NC_004680.1 + 44222 0.67 0.44737
Target:  5'- cGCACUGUcCGGGCCuag--CGGCaGCg -3'
miRNA:   3'- -CGUGACAcGCCCGGugguaGCCGcUG- -5'
18089 5' -59.4 NC_004680.1 + 12282 0.67 0.441679
Target:  5'- aCGCUGccGCGGacggggcggcuaccGCCACCGUCggaacggauaccugGGCGGCa -3'
miRNA:   3'- cGUGACa-CGCC--------------CGGUGGUAG--------------CCGCUG- -5'
18089 5' -59.4 NC_004680.1 + 45059 0.68 0.419335
Target:  5'- aGCACUGUGgaguuuccguccCGauCCACCGUCGguGCGACg -3'
miRNA:   3'- -CGUGACAC------------GCccGGUGGUAGC--CGCUG- -5'
18089 5' -59.4 NC_004680.1 + 11917 0.68 0.419335
Target:  5'- aCGCUGUGCGcgaaGUCGCg--CGGCGACu -3'
miRNA:   3'- cGUGACACGCc---CGGUGguaGCCGCUG- -5'
18089 5' -59.4 NC_004680.1 + 1957 0.68 0.383664
Target:  5'- aCGCgGUGCuGGCUGCCAaugugUGGCGGCc -3'
miRNA:   3'- cGUGaCACGcCCGGUGGUa----GCCGCUG- -5'
18089 5' -59.4 NC_004680.1 + 20839 0.69 0.366599
Target:  5'- aCGCUGgcgGCGgaacaGGCC-CgAUCGGCGGCc -3'
miRNA:   3'- cGUGACa--CGC-----CCGGuGgUAGCCGCUG- -5'
18089 5' -59.4 NC_004680.1 + 5609 0.69 0.341999
Target:  5'- cGCuGCUGgucUGCGGGCgggCACCAUCGG-GAa -3'
miRNA:   3'- -CG-UGAC---ACGCCCG---GUGGUAGCCgCUg -5'
18089 5' -59.4 NC_004680.1 + 40008 0.69 0.334068
Target:  5'- -gGCUGacgcaGCGGGCCgucacccccacGCCAggaGGCGACg -3'
miRNA:   3'- cgUGACa----CGCCCGG-----------UGGUag-CCGCUG- -5'
18089 5' -59.4 NC_004680.1 + 49527 0.7 0.311089
Target:  5'- gGCGgUGgGCGGGCCugUcauuuggcUUGGCGACg -3'
miRNA:   3'- -CGUgACaCGCCCGGugGu-------AGCCGCUG- -5'
18089 5' -59.4 NC_004680.1 + 40832 0.71 0.275501
Target:  5'- aCGgUGUGCGGGUCGCCGaCGGUa-- -3'
miRNA:   3'- cGUgACACGCCCGGUGGUaGCCGcug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.