miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18090 3' -55.1 NC_004680.1 + 14700 0.66 0.782321
Target:  5'- gCUGCGCCGGUUCGCCAggCGacuucgcggggaUCGCCg -3'
miRNA:   3'- gGGUGUGGCUGAGUGGUa-GU------------AGCGGa -5'
18090 3' -55.1 NC_004680.1 + 23263 0.66 0.782321
Target:  5'- gCCACGgaGAUUUcaACC-UCGUCGCCg -3'
miRNA:   3'- gGGUGUggCUGAG--UGGuAGUAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 59026 0.66 0.782321
Target:  5'- uCCCACACCGcCUgcaacaaGCCA-CAUucCGCCg -3'
miRNA:   3'- -GGGUGUGGCuGAg------UGGUaGUA--GCGGa -5'
18090 3' -55.1 NC_004680.1 + 45892 0.66 0.782321
Target:  5'- aCCGaacCACCGAaauguucaaCUcCACCGUCAcCGCCg -3'
miRNA:   3'- gGGU---GUGGCU---------GA-GUGGUAGUaGCGGa -5'
18090 3' -55.1 NC_004680.1 + 8878 0.66 0.781338
Target:  5'- aCCGCGCCGGgacggguCUCcgccggcaggACCAucUCGUUGCCg -3'
miRNA:   3'- gGGUGUGGCU-------GAG----------UGGU--AGUAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 39179 0.66 0.772423
Target:  5'- aCCCGCuuCGACUCGCCcgaggcucgCAccaGCCUg -3'
miRNA:   3'- -GGGUGugGCUGAGUGGua-------GUag-CGGA- -5'
18090 3' -55.1 NC_004680.1 + 24133 0.66 0.772423
Target:  5'- aUCUuCGCCGACgUCACCGaacCAUCGaCCg -3'
miRNA:   3'- -GGGuGUGGCUG-AGUGGUa--GUAGC-GGa -5'
18090 3' -55.1 NC_004680.1 + 25678 0.66 0.762383
Target:  5'- aCCgGCACCGGcCUCAUCuacaaaCA-CGCCUg -3'
miRNA:   3'- -GGgUGUGGCU-GAGUGGua----GUaGCGGA- -5'
18090 3' -55.1 NC_004680.1 + 43721 0.66 0.762383
Target:  5'- gCUGCGCCGGCUUuCgCGUCGUC-CCUc -3'
miRNA:   3'- gGGUGUGGCUGAGuG-GUAGUAGcGGA- -5'
18090 3' -55.1 NC_004680.1 + 1467 0.66 0.762383
Target:  5'- aCCCGCuucuccACCGucgacaaaUCAUCAugcUCAUCGCCa -3'
miRNA:   3'- -GGGUG------UGGCug------AGUGGU---AGUAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 31008 0.66 0.752212
Target:  5'- gCCACACCGAC-CGCCA-CAaCuCCa -3'
miRNA:   3'- gGGUGUGGCUGaGUGGUaGUaGcGGa -5'
18090 3' -55.1 NC_004680.1 + 57621 0.66 0.752212
Target:  5'- gUCCgggaACACCGACUCgaACCcgCAgcCGCCc -3'
miRNA:   3'- -GGG----UGUGGCUGAG--UGGuaGUa-GCGGa -5'
18090 3' -55.1 NC_004680.1 + 56520 0.66 0.741922
Target:  5'- gCCACACCaGCgcugucCGCCGagaCAUCGCCc -3'
miRNA:   3'- gGGUGUGGcUGa-----GUGGUa--GUAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 46049 0.66 0.731523
Target:  5'- aCCAcCACCGACgaCGCCcaacacuUCAUcCGCCg -3'
miRNA:   3'- gGGU-GUGGCUGa-GUGGu------AGUA-GCGGa -5'
18090 3' -55.1 NC_004680.1 + 57994 0.67 0.721027
Target:  5'- aCCaACACCa--UCGgCAUCGUCGCCc -3'
miRNA:   3'- gGG-UGUGGcugAGUgGUAGUAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 21460 0.67 0.721027
Target:  5'- aCCCGagaaguacacCGCCGGCgcCGCCAUaCGUgGCCg -3'
miRNA:   3'- -GGGU----------GUGGCUGa-GUGGUA-GUAgCGGa -5'
18090 3' -55.1 NC_004680.1 + 28254 0.67 0.710444
Target:  5'- cCCCgACGCCGAC--ACCGcCcgCGCCg -3'
miRNA:   3'- -GGG-UGUGGCUGagUGGUaGuaGCGGa -5'
18090 3' -55.1 NC_004680.1 + 58435 0.67 0.708319
Target:  5'- aCCACAUgGGCaCGCCAccaaggccacacCAUCGCCUa -3'
miRNA:   3'- gGGUGUGgCUGaGUGGUa-----------GUAGCGGA- -5'
18090 3' -55.1 NC_004680.1 + 55337 0.67 0.704058
Target:  5'- gCCCGgGCUG-CgCACCAUCAguguccccccggaacUCGCCg -3'
miRNA:   3'- -GGGUgUGGCuGaGUGGUAGU---------------AGCGGa -5'
18090 3' -55.1 NC_004680.1 + 2805 0.67 0.699787
Target:  5'- aCCACAcaaucgcaaaauCCGACUCGgCAUCGagguccCGCCa -3'
miRNA:   3'- gGGUGU------------GGCUGAGUgGUAGUa-----GCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.