miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18090 3' -55.1 NC_004680.1 + 16975 1.09 0.001329
Target:  5'- uCCCACACCGACUCACCAUCAUCGCCUu -3'
miRNA:   3'- -GGGUGUGGCUGAGUGGUAGUAGCGGA- -5'
18090 3' -55.1 NC_004680.1 + 17287 0.74 0.32267
Target:  5'- gCCACACCGGggCACCGUCcgaucacGUUGCCg -3'
miRNA:   3'- gGGUGUGGCUgaGUGGUAG-------UAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 47149 0.73 0.355875
Target:  5'- gCCCGgACCguacGACUCACCccccAUCGUCGUCg -3'
miRNA:   3'- -GGGUgUGG----CUGAGUGG----UAGUAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 7517 0.73 0.364331
Target:  5'- gCCGCACCaAgUgGCCGUCGUCGUCa -3'
miRNA:   3'- gGGUGUGGcUgAgUGGUAGUAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 9807 0.71 0.446432
Target:  5'- cCCCGgccCGCCGACaCACCAU--UCGCCg -3'
miRNA:   3'- -GGGU---GUGGCUGaGUGGUAguAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 31759 0.71 0.46604
Target:  5'- gCCCGCuaACCGGuaCACCGUguUCGCCg -3'
miRNA:   3'- -GGGUG--UGGCUgaGUGGUAguAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 41219 0.71 0.47601
Target:  5'- aUCACGuuGAUUCugC-UCGUCGCCg -3'
miRNA:   3'- gGGUGUggCUGAGugGuAGUAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 58318 0.71 0.47601
Target:  5'- gCC-CACUGGCUCACCugcCggCGCCUa -3'
miRNA:   3'- gGGuGUGGCUGAGUGGua-GuaGCGGA- -5'
18090 3' -55.1 NC_004680.1 + 2123 0.71 0.486085
Target:  5'- aCCCACAgaGGCUgGCCcgUAUCGUCc -3'
miRNA:   3'- -GGGUGUggCUGAgUGGuaGUAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 17405 0.71 0.486085
Target:  5'- cCCCGC-CUGACguucaCACCGaaaauagaUCGUCGCCg -3'
miRNA:   3'- -GGGUGuGGCUGa----GUGGU--------AGUAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 22667 0.7 0.495238
Target:  5'- gCC-CACCGGCUUcggguggguggggGCCGUCGcCGCCUc -3'
miRNA:   3'- gGGuGUGGCUGAG-------------UGGUAGUaGCGGA- -5'
18090 3' -55.1 NC_004680.1 + 52422 0.7 0.50653
Target:  5'- gUCCGCGCaGACUCACgCGUUgAUCGCUa -3'
miRNA:   3'- -GGGUGUGgCUGAGUG-GUAG-UAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 36524 0.7 0.50653
Target:  5'- gCCgACACCG-CUCGCaagcUCGUCGCUg -3'
miRNA:   3'- -GGgUGUGGCuGAGUGgu--AGUAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 37032 0.7 0.50653
Target:  5'- uUCAUGCCGGgUCACCG-CAUCGCa- -3'
miRNA:   3'- gGGUGUGGCUgAGUGGUaGUAGCGga -5'
18090 3' -55.1 NC_004680.1 + 12543 0.7 0.51689
Target:  5'- -gCGCACCGGCa-GCCAUCGggcCGCCg -3'
miRNA:   3'- ggGUGUGGCUGagUGGUAGUa--GCGGa -5'
18090 3' -55.1 NC_004680.1 + 46013 0.7 0.527333
Target:  5'- gCCCGCACCcaaGGC-CGCCccGUCAcCGCCg -3'
miRNA:   3'- -GGGUGUGG---CUGaGUGG--UAGUaGCGGa -5'
18090 3' -55.1 NC_004680.1 + 33340 0.7 0.537855
Target:  5'- uCCCGCACCGccgaGCUgGuCCAugUCAUCGUCc -3'
miRNA:   3'- -GGGUGUGGC----UGAgU-GGU--AGUAGCGGa -5'
18090 3' -55.1 NC_004680.1 + 34777 0.7 0.548447
Target:  5'- aCCGCGCuCGcuguGCUCGCCGUCGuaggcaUCGUCUc -3'
miRNA:   3'- gGGUGUG-GC----UGAGUGGUAGU------AGCGGA- -5'
18090 3' -55.1 NC_004680.1 + 36620 0.69 0.555901
Target:  5'- gCgCACACCGGuuccgauucggaugUUCACCGUCAggaguUCGCCc -3'
miRNA:   3'- -GgGUGUGGCU--------------GAGUGGUAGU-----AGCGGa -5'
18090 3' -55.1 NC_004680.1 + 21342 0.69 0.563384
Target:  5'- aCCGCGCgGGCUCAgccCCGUCGgccacguauggcggCGCCg -3'
miRNA:   3'- gGGUGUGgCUGAGU---GGUAGUa-------------GCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.