miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18090 5' -54.6 NC_004680.1 + 55003 0.66 0.804885
Target:  5'- cGUcGGGCGgccAGGaUCAugCGGcGCAUGg -3'
miRNA:   3'- -CGuCCCGC---UCCaAGUugGCCaUGUGC- -5'
18090 5' -54.6 NC_004680.1 + 11709 0.66 0.785615
Target:  5'- cGCAGGGCGu-GUUCGGCCcgcaGUAC-Ca -3'
miRNA:   3'- -CGUCCCGCucCAAGUUGGc---CAUGuGc -5'
18090 5' -54.6 NC_004680.1 + 35834 0.66 0.764707
Target:  5'- gGCGGucGGCGAcgcuuuuGGUUCGggagaauuuugaACCGGUugGCa -3'
miRNA:   3'- -CGUC--CCGCU-------CCAAGU------------UGGCCAugUGc -5'
18090 5' -54.6 NC_004680.1 + 16945 0.67 0.744243
Target:  5'- cGCGGGGC-AGGUgccgguggugacUCGACCGcugacggguucguGUugGCGg -3'
miRNA:   3'- -CGUCCCGcUCCA------------AGUUGGC-------------CAugUGC- -5'
18090 5' -54.6 NC_004680.1 + 47317 0.67 0.739054
Target:  5'- cCAGGuugagaagcucacccGCGAGGgaCAGCCGG-ACGCc -3'
miRNA:   3'- cGUCC---------------CGCUCCaaGUUGGCCaUGUGc -5'
18090 5' -54.6 NC_004680.1 + 15890 0.67 0.724387
Target:  5'- aGCcGGGUGAGGac--ACCGGUgucgaugcguGCACGa -3'
miRNA:   3'- -CGuCCCGCUCCaaguUGGCCA----------UGUGC- -5'
18090 5' -54.6 NC_004680.1 + 14128 0.67 0.724387
Target:  5'- uCGGGGCaucGGGUUUgguaugcaGGCCGGUgGCGCGu -3'
miRNA:   3'- cGUCCCGc--UCCAAG--------UUGGCCA-UGUGC- -5'
18090 5' -54.6 NC_004680.1 + 28273 0.67 0.713801
Target:  5'- aGCAcGGGCcGGGUguccaCGACCGGc-CGCGg -3'
miRNA:   3'- -CGU-CCCGcUCCAa----GUUGGCCauGUGC- -5'
18090 5' -54.6 NC_004680.1 + 12313 0.68 0.670774
Target:  5'- aGUGGGGCGGGGg-CGACCgccgcuucgGGUGcCGCGc -3'
miRNA:   3'- -CGUCCCGCUCCaaGUUGG---------CCAU-GUGC- -5'
18090 5' -54.6 NC_004680.1 + 56620 0.68 0.6599
Target:  5'- gGCAGGGCGAGGgcgaugUCucGgCGGacaGCGCu -3'
miRNA:   3'- -CGUCCCGCUCCa-----AGu-UgGCCa--UGUGc -5'
18090 5' -54.6 NC_004680.1 + 41923 0.69 0.627169
Target:  5'- uGCAGugcGGUGAGGUguUCgAACCGGU-CACc -3'
miRNA:   3'- -CGUC---CCGCUCCA--AG-UUGGCCAuGUGc -5'
18090 5' -54.6 NC_004680.1 + 6006 0.69 0.627169
Target:  5'- --cGGGCGGGuGUUCAccACCGGggcCACu -3'
miRNA:   3'- cguCCCGCUC-CAAGU--UGGCCau-GUGc -5'
18090 5' -54.6 NC_004680.1 + 2011 0.69 0.605354
Target:  5'- uGCGGGGCGGcGUgagcugaAGCUGGUGgACGa -3'
miRNA:   3'- -CGUCCCGCUcCAag-----UUGGCCAUgUGC- -5'
18090 5' -54.6 NC_004680.1 + 36065 0.7 0.562062
Target:  5'- uCGGGGCgGGGGUUCAACCG--ACAa- -3'
miRNA:   3'- cGUCCCG-CUCCAAGUUGGCcaUGUgc -5'
18090 5' -54.6 NC_004680.1 + 51147 0.7 0.562062
Target:  5'- uGCGGGGCaaagcuGAGGgcgu-CCGGUugGCGc -3'
miRNA:   3'- -CGUCCCG------CUCCaaguuGGCCAugUGC- -5'
18090 5' -54.6 NC_004680.1 + 48312 0.7 0.551359
Target:  5'- cGUGGGGUGAGGcg-AugCGGUGgGCGa -3'
miRNA:   3'- -CGUCCCGCUCCaagUugGCCAUgUGC- -5'
18090 5' -54.6 NC_004680.1 + 34881 0.74 0.357698
Target:  5'- cGCAuccGGuuGCGAGGggUGACCGGUGCugGu -3'
miRNA:   3'- -CGU---CC--CGCUCCaaGUUGGCCAUGugC- -5'
18090 5' -54.6 NC_004680.1 + 32130 0.75 0.294695
Target:  5'- cGC-GGGUGAGGcaUUCAcgGCUGGUGCGCa -3'
miRNA:   3'- -CGuCCCGCUCC--AAGU--UGGCCAUGUGc -5'
18090 5' -54.6 NC_004680.1 + 4274 0.81 0.13351
Target:  5'- aGCAuGGCGAGGUUgGGCCGGUccucGCAUGg -3'
miRNA:   3'- -CGUcCCGCUCCAAgUUGGCCA----UGUGC- -5'
18090 5' -54.6 NC_004680.1 + 16936 1.1 0.00124
Target:  5'- uGCAGGGCGAGGUUCAACCGGUACACGc -3'
miRNA:   3'- -CGUCCCGCUCCAAGUUGGCCAUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.