miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18091 3' -54.3 NC_004680.1 + 48429 0.66 0.768967
Target:  5'- -cCUgGAGGCGGUGUcgUGCaGGUCGu- -3'
miRNA:   3'- auGGgCUCCGCCACA--AUGaCUAGCug -5'
18091 3' -54.3 NC_004680.1 + 18844 0.66 0.768967
Target:  5'- -cCCUGGGcGUGGUGUcgugGAUCGGCu -3'
miRNA:   3'- auGGGCUC-CGCCACAaugaCUAGCUG- -5'
18091 3' -54.3 NC_004680.1 + 24436 0.66 0.767946
Target:  5'- aGCCCGuaccaguGGGCGccucggGUUGCUGggUGACa -3'
miRNA:   3'- aUGGGC-------UCCGCca----CAAUGACuaGCUG- -5'
18091 3' -54.3 NC_004680.1 + 12959 0.66 0.748283
Target:  5'- gGCCUuGGGCGGcgGcUUGCgGGUCGAUg -3'
miRNA:   3'- aUGGGcUCCGCCa-C-AAUGaCUAGCUG- -5'
18091 3' -54.3 NC_004680.1 + 59446 0.67 0.727119
Target:  5'- -cCCCGGGGgGG-GUUGCUGGggGGg -3'
miRNA:   3'- auGGGCUCCgCCaCAAUGACUagCUg -5'
18091 3' -54.3 NC_004680.1 + 33155 0.67 0.716387
Target:  5'- gGCCau-GGCGGUGUUGC-GGUCcACg -3'
miRNA:   3'- aUGGgcuCCGCCACAAUGaCUAGcUG- -5'
18091 3' -54.3 NC_004680.1 + 13976 0.67 0.70557
Target:  5'- cGCCCGcuGCuGGUGgcuccGCUGAUCGGg -3'
miRNA:   3'- aUGGGCucCG-CCACaa---UGACUAGCUg -5'
18091 3' -54.3 NC_004680.1 + 35102 0.67 0.704484
Target:  5'- gGCCCGAGGuUGGcucggcugcgucgUGUcACUGGUCGcgGCg -3'
miRNA:   3'- aUGGGCUCC-GCC-------------ACAaUGACUAGC--UG- -5'
18091 3' -54.3 NC_004680.1 + 1900 0.67 0.683729
Target:  5'- -gUuuGAGGC-GUGUUGCUGcugCGACg -3'
miRNA:   3'- auGggCUCCGcCACAAUGACua-GCUG- -5'
18091 3' -54.3 NC_004680.1 + 8210 0.68 0.672728
Target:  5'- uUACCC--GGCGGUGaaGCUGGaCGACc -3'
miRNA:   3'- -AUGGGcuCCGCCACaaUGACUaGCUG- -5'
18091 3' -54.3 NC_004680.1 + 7684 0.68 0.639535
Target:  5'- gGCCUGcAGGCGGUGUUcauccgCGACa -3'
miRNA:   3'- aUGGGC-UCCGCCACAAugacuaGCUG- -5'
18091 3' -54.3 NC_004680.1 + 27358 0.71 0.477496
Target:  5'- cAUCCGAuGGUGGUGUgacGgUGGUCGAUu -3'
miRNA:   3'- aUGGGCU-CCGCCACAa--UgACUAGCUG- -5'
18091 3' -54.3 NC_004680.1 + 25054 0.73 0.390335
Target:  5'- -uCCCGGuGGCGGUGggGCcGGUCGGg -3'
miRNA:   3'- auGGGCU-CCGCCACaaUGaCUAGCUg -5'
18091 3' -54.3 NC_004680.1 + 40966 0.76 0.231033
Target:  5'- cACgCCGcGGGCGGUGguccacUGCUGAUUGACg -3'
miRNA:   3'- aUG-GGC-UCCGCCACa-----AUGACUAGCUG- -5'
18091 3' -54.3 NC_004680.1 + 17113 1.09 0.001341
Target:  5'- uUACCCGAGGCGGUGUUACUGAUCGACg -3'
miRNA:   3'- -AUGGGCUCCGCCACAAUGACUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.