miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18091 5' -55.2 NC_004680.1 + 25683 0.66 0.749232
Target:  5'- -cACCGG-CCUCAucuacaaACACGccUGCGCCa -3'
miRNA:   3'- uaUGGCUaGGGGU-------UGUGCa-ACGCGGc -5'
18091 5' -55.2 NC_004680.1 + 55597 0.66 0.73986
Target:  5'- uUACgCGGUgCCCggUugG-UGCGUCGg -3'
miRNA:   3'- uAUG-GCUAgGGGuuGugCaACGCGGC- -5'
18091 5' -55.2 NC_004680.1 + 34088 0.66 0.73986
Target:  5'- -gACCGAUcaCCCCAgcaGCGCGgaacaCGCCa -3'
miRNA:   3'- uaUGGCUA--GGGGU---UGUGCaac--GCGGc -5'
18091 5' -55.2 NC_004680.1 + 37933 0.66 0.729343
Target:  5'- --uUCGAUCUCCAcACACGgagUGCgGCCc -3'
miRNA:   3'- uauGGCUAGGGGU-UGUGCa--ACG-CGGc -5'
18091 5' -55.2 NC_004680.1 + 5241 0.66 0.71873
Target:  5'- -gACgCGAUUUCCGACACcg-GCGUCGa -3'
miRNA:   3'- uaUG-GCUAGGGGUUGUGcaaCGCGGC- -5'
18091 5' -55.2 NC_004680.1 + 24542 0.66 0.717664
Target:  5'- -cACCGAUCagugucaCCCAGCAaccCGagGCGCCc -3'
miRNA:   3'- uaUGGCUAG-------GGGUUGU---GCaaCGCGGc -5'
18091 5' -55.2 NC_004680.1 + 33650 0.66 0.708032
Target:  5'- -gGCCGAggaguUCCCCAcgGCGg-GCGCCc -3'
miRNA:   3'- uaUGGCU-----AGGGGUugUGCaaCGCGGc -5'
18091 5' -55.2 NC_004680.1 + 58886 0.67 0.686423
Target:  5'- uUGCCGAUCCCUAguucagucuggGC-UGUUGgGUCGu -3'
miRNA:   3'- uAUGGCUAGGGGU-----------UGuGCAACgCGGC- -5'
18091 5' -55.2 NC_004680.1 + 15102 0.67 0.675535
Target:  5'- -gGCCGGU-UUCAACAuCGUUGCGCgGg -3'
miRNA:   3'- uaUGGCUAgGGGUUGU-GCAACGCGgC- -5'
18091 5' -55.2 NC_004680.1 + 34381 0.68 0.603138
Target:  5'- uGUGCCGGUCCacgacgcgacaCCAucggguuggauguucGCGCGUacgGUGCCGg -3'
miRNA:   3'- -UAUGGCUAGG-----------GGU---------------UGUGCAa--CGCGGC- -5'
18091 5' -55.2 NC_004680.1 + 34022 0.68 0.598758
Target:  5'- -gAUCGGUCCaaCCGAguCGUUGCcGCCGc -3'
miRNA:   3'- uaUGGCUAGG--GGUUguGCAACG-CGGC- -5'
18091 5' -55.2 NC_004680.1 + 12637 0.68 0.592196
Target:  5'- cAUGCCGAUCccaccggagccugaaCCCGAauacggugcaACGUUcGCGCCGa -3'
miRNA:   3'- -UAUGGCUAG---------------GGGUUg---------UGCAA-CGCGGC- -5'
18091 5' -55.2 NC_004680.1 + 13152 0.69 0.576935
Target:  5'- cUGgCGGUCCCCGAC-CGgacCGCCGc -3'
miRNA:   3'- uAUgGCUAGGGGUUGuGCaacGCGGC- -5'
18091 5' -55.2 NC_004680.1 + 34986 0.69 0.532832
Target:  5'- ---aCGAgugUCCgCCAACaacauggACGUUGCGCCGg -3'
miRNA:   3'- uaugGCU---AGG-GGUUG-------UGCAACGCGGC- -5'
18091 5' -55.2 NC_004680.1 + 28314 0.7 0.512796
Target:  5'- -gGCCGAUCCaCCAgggaACACcg-GUGCCGc -3'
miRNA:   3'- uaUGGCUAGG-GGU----UGUGcaaCGCGGC- -5'
18091 5' -55.2 NC_004680.1 + 13323 0.7 0.502376
Target:  5'- -gGCCGGUCCCCGAaAUGgacuCGCCGc -3'
miRNA:   3'- uaUGGCUAGGGGUUgUGCaac-GCGGC- -5'
18091 5' -55.2 NC_004680.1 + 27940 0.7 0.487945
Target:  5'- -cGCCGAUCgcgCCCAGCGCGUccaccaccguccgGCcGCCGa -3'
miRNA:   3'- uaUGGCUAG---GGGUUGUGCAa------------CG-CGGC- -5'
18091 5' -55.2 NC_004680.1 + 16931 0.72 0.394951
Target:  5'- -gACCcGUCCCCAGuCGCGgggcagGUGCCGg -3'
miRNA:   3'- uaUGGcUAGGGGUU-GUGCaa----CGCGGC- -5'
18091 5' -55.2 NC_004680.1 + 13543 0.72 0.394044
Target:  5'- --cCCGAUCUCCAACggugcuuGCGgUGCGCCu -3'
miRNA:   3'- uauGGCUAGGGGUUG-------UGCaACGCGGc -5'
18091 5' -55.2 NC_004680.1 + 17079 1.06 0.001773
Target:  5'- cAUACCGAUCCCCAACACGUUGCGCCGc -3'
miRNA:   3'- -UAUGGCUAGGGGUUGUGCAACGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.