miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18092 5' -52 NC_004680.1 + 28199 0.66 0.892677
Target:  5'- -cGGGAUGUaCAG-GCC--GUCGCGCa -3'
miRNA:   3'- acCCCUACAaGUUgCGGguUAGUGCG- -5'
18092 5' -52 NC_004680.1 + 11091 0.66 0.892677
Target:  5'- uUGGuGGcgGcccCGGCGCCCAAgcagaACGCc -3'
miRNA:   3'- -ACC-CCuaCaa-GUUGCGGGUUag---UGCG- -5'
18092 5' -52 NC_004680.1 + 17584 0.66 0.891947
Target:  5'- cUGGGG-UGUUCAucccuggugagGCGUcguucgaCCAGUUGCGUg -3'
miRNA:   3'- -ACCCCuACAAGU-----------UGCG-------GGUUAGUGCG- -5'
18092 5' -52 NC_004680.1 + 57066 0.66 0.869599
Target:  5'- cGGGGAUGagugUGGCGUUCGG-CACGUc -3'
miRNA:   3'- aCCCCUACaa--GUUGCGGGUUaGUGCG- -5'
18092 5' -52 NC_004680.1 + 26428 0.66 0.867977
Target:  5'- gGGGGGUGUUCAgAUGUagaagaggguGUCGCGUu -3'
miRNA:   3'- aCCCCUACAAGU-UGCGggu-------UAGUGCG- -5'
18092 5' -52 NC_004680.1 + 42541 0.67 0.844228
Target:  5'- -cGGGA-GUUUcGCGCCCcgccUCAUGCg -3'
miRNA:   3'- acCCCUaCAAGuUGCGGGuu--AGUGCG- -5'
18092 5' -52 NC_004680.1 + 26932 0.67 0.835298
Target:  5'- gUGGGGGUaGUUCuuCGUggCAggCACGCg -3'
miRNA:   3'- -ACCCCUA-CAAGuuGCGg-GUuaGUGCG- -5'
18092 5' -52 NC_004680.1 + 20506 0.67 0.826147
Target:  5'- cGGcGGGUa-UCAACGCgCUcugGAUCACGCu -3'
miRNA:   3'- aCC-CCUAcaAGUUGCG-GG---UUAGUGCG- -5'
18092 5' -52 NC_004680.1 + 18480 0.68 0.816785
Target:  5'- cUGGaGGAuuUGUUCGACGC---GUUGCGCa -3'
miRNA:   3'- -ACC-CCU--ACAAGUUGCGgguUAGUGCG- -5'
18092 5' -52 NC_004680.1 + 17961 0.68 0.797469
Target:  5'- cGGGGcaggcagaAUGUUCGGCGUCUGAUUcgagAUGCc -3'
miRNA:   3'- aCCCC--------UACAAGUUGCGGGUUAG----UGCG- -5'
18092 5' -52 NC_004680.1 + 10482 0.68 0.787538
Target:  5'- gGGGcGGUGUUCGGuaaGCCCAccgAagACGCc -3'
miRNA:   3'- aCCC-CUACAAGUUg--CGGGU---UagUGCG- -5'
18092 5' -52 NC_004680.1 + 12497 0.68 0.787538
Target:  5'- cGGGGcuggGUUaGGCGCCCAcgCAC-Ca -3'
miRNA:   3'- aCCCCua--CAAgUUGCGGGUuaGUGcG- -5'
18092 5' -52 NC_004680.1 + 34305 0.68 0.77642
Target:  5'- cUGGcGGGUGUcacuccgUCAugGUCCAAguUC-CGCa -3'
miRNA:   3'- -ACC-CCUACA-------AGUugCGGGUU--AGuGCG- -5'
18092 5' -52 NC_004680.1 + 39173 0.69 0.767184
Target:  5'- gGGGuGAUGUgauACGcCCCAAUCAgGg -3'
miRNA:   3'- aCCC-CUACAaguUGC-GGGUUAGUgCg -5'
18092 5' -52 NC_004680.1 + 42947 0.69 0.735605
Target:  5'- -uGGGAgca-CAACGCUUggUCACGCc -3'
miRNA:   3'- acCCCUacaaGUUGCGGGuuAGUGCG- -5'
18092 5' -52 NC_004680.1 + 21648 0.69 0.724847
Target:  5'- gGGGGGUG-UCGuCGUCCAAgcUCACa- -3'
miRNA:   3'- aCCCCUACaAGUuGCGGGUU--AGUGcg -5'
18092 5' -52 NC_004680.1 + 42199 0.7 0.713994
Target:  5'- cGGGGG---UCAggacACGgCCGGUCAUGCg -3'
miRNA:   3'- aCCCCUacaAGU----UGCgGGUUAGUGCG- -5'
18092 5' -52 NC_004680.1 + 50767 0.7 0.692049
Target:  5'- uUGGcGcGAUagGUUCAACGCCCGGUgGCa- -3'
miRNA:   3'- -ACC-C-CUA--CAAGUUGCGGGUUAgUGcg -5'
18092 5' -52 NC_004680.1 + 21946 0.71 0.647533
Target:  5'- gUGGGcAUGgcgcCGugGCCCAcaGUCGCGUg -3'
miRNA:   3'- -ACCCcUACaa--GUugCGGGU--UAGUGCG- -5'
18092 5' -52 NC_004680.1 + 47431 0.72 0.569449
Target:  5'- cGGGGAUGUcaUCAAguCGUCuCGAUCAaGCa -3'
miRNA:   3'- aCCCCUACA--AGUU--GCGG-GUUAGUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.