miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18094 3' -55.4 NC_004680.1 + 6019 0.66 0.732735
Target:  5'- ---aCCACCGGGGccACUcggGUGCgGGCGCa -3'
miRNA:   3'- uuuaGGUGGCCCC--UGA---CGCG-UUGUGg -5'
18094 3' -55.4 NC_004680.1 + 18477 0.66 0.731678
Target:  5'- ----aCGCUGGaGGAUuuguucgacgcguUGCGCAACAUCu -3'
miRNA:   3'- uuuagGUGGCC-CCUG-------------ACGCGUUGUGG- -5'
18094 3' -55.4 NC_004680.1 + 4878 0.66 0.723187
Target:  5'- --uUCCACCGGucggcGGAUUcGCGCAucucuucuucgguguCGCCa -3'
miRNA:   3'- uuuAGGUGGCC-----CCUGA-CGCGUu--------------GUGG- -5'
18094 3' -55.4 NC_004680.1 + 55767 0.66 0.722121
Target:  5'- uGGUCCacugGCCGGGGuCggaGUGCAugaGCACUu -3'
miRNA:   3'- uUUAGG----UGGCCCCuGa--CGCGU---UGUGG- -5'
18094 3' -55.4 NC_004680.1 + 29825 0.66 0.722121
Target:  5'- ---aUCGCCGaaGGugUGCGCAACAa- -3'
miRNA:   3'- uuuaGGUGGCc-CCugACGCGUUGUgg -5'
18094 3' -55.4 NC_004680.1 + 57072 0.66 0.722121
Target:  5'- ---aCCAuCCGGGGAUgagugugGCGUucGGCACg -3'
miRNA:   3'- uuuaGGU-GGCCCCUGa------CGCG--UUGUGg -5'
18094 3' -55.4 NC_004680.1 + 24763 0.66 0.721055
Target:  5'- -cAUCCACCucGGgaucuccGGGCaGCGgCGGCACCg -3'
miRNA:   3'- uuUAGGUGG--CC-------CCUGaCGC-GUUGUGG- -5'
18094 3' -55.4 NC_004680.1 + 8341 0.66 0.721055
Target:  5'- cAGGUCCGCCGugucaGGGucggucuuggaacGCUGCuuCGACGCCu -3'
miRNA:   3'- -UUUAGGUGGC-----CCC-------------UGACGc-GUUGUGG- -5'
18094 3' -55.4 NC_004680.1 + 27703 0.66 0.711418
Target:  5'- ---aCCAUUGGGcGGCUgGCGgCAAgACCg -3'
miRNA:   3'- uuuaGGUGGCCC-CUGA-CGC-GUUgUGG- -5'
18094 3' -55.4 NC_004680.1 + 39539 0.66 0.711418
Target:  5'- ---aUCGCCGGGcGGCUGCGgGugAgguuCCa -3'
miRNA:   3'- uuuaGGUGGCCC-CUGACGCgUugU----GG- -5'
18094 3' -55.4 NC_004680.1 + 15555 0.66 0.711418
Target:  5'- ----aCACCGGGGuucgcaGCaUGCGUguaAACGCCu -3'
miRNA:   3'- uuuagGUGGCCCC------UG-ACGCG---UUGUGG- -5'
18094 3' -55.4 NC_004680.1 + 26697 0.66 0.700636
Target:  5'- --uUCCGCCgagaacGGGGAUggaGCGgAgcGCACCg -3'
miRNA:   3'- uuuAGGUGG------CCCCUGa--CGCgU--UGUGG- -5'
18094 3' -55.4 NC_004680.1 + 17314 0.66 0.700636
Target:  5'- ---gCCACCaGGaucagccgcuccGAUUGCGCcACACCg -3'
miRNA:   3'- uuuaGGUGGcCC------------CUGACGCGuUGUGG- -5'
18094 3' -55.4 NC_004680.1 + 56918 0.66 0.700636
Target:  5'- aAGGUCUACCGGaGAagugGCGCGACGg- -3'
miRNA:   3'- -UUUAGGUGGCCcCUga--CGCGUUGUgg -5'
18094 3' -55.4 NC_004680.1 + 40480 0.66 0.683252
Target:  5'- cGGUCCGCUaGGGccuggucaaguuccuGCUGCGUucuCACCg -3'
miRNA:   3'- uUUAGGUGGcCCC---------------UGACGCGuu-GUGG- -5'
18094 3' -55.4 NC_004680.1 + 49072 0.66 0.675604
Target:  5'- ---cCCACCGaGgcugugacgaugcaGGACUGCGCGGgAUCg -3'
miRNA:   3'- uuuaGGUGGC-C--------------CCUGACGCGUUgUGG- -5'
18094 3' -55.4 NC_004680.1 + 10818 0.67 0.656953
Target:  5'- ----gCAgCGGGGAUcaGUGCAGCACUg -3'
miRNA:   3'- uuuagGUgGCCCCUGa-CGCGUUGUGG- -5'
18094 3' -55.4 NC_004680.1 + 6400 0.67 0.656953
Target:  5'- --uUCCGCUGGGuGAacggccCUGCcgucaGCGAUACCg -3'
miRNA:   3'- uuuAGGUGGCCC-CU------GACG-----CGUUGUGG- -5'
18094 3' -55.4 NC_004680.1 + 4297 0.67 0.656953
Target:  5'- -cGUCCGCCGcGGuCUGCGauguccgcgAACGCCu -3'
miRNA:   3'- uuUAGGUGGCcCCuGACGCg--------UUGUGG- -5'
18094 3' -55.4 NC_004680.1 + 12515 0.67 0.645948
Target:  5'- ---aCCACCGGuggugggcagcgGGGCUGgGUuaGGCGCCc -3'
miRNA:   3'- uuuaGGUGGCC------------CCUGACgCG--UUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.