miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18094 5' -58.4 NC_004680.1 + 31039 0.66 0.596882
Target:  5'- uACGGgGCCGCCccgcuUGCAcaacucuccagugcaAgCGGggCGGCc -3'
miRNA:   3'- -UGCCgUGGUGG-----ACGU---------------UgGCCuaGCCG- -5'
18094 5' -58.4 NC_004680.1 + 24623 0.66 0.581981
Target:  5'- uUGGCGCCGCCaccGCcaccACCGccuccuGAUCGGUu -3'
miRNA:   3'- uGCCGUGGUGGa--CGu---UGGC------CUAGCCG- -5'
18094 5' -58.4 NC_004680.1 + 41112 0.66 0.580919
Target:  5'- gUGGUGCCAUgUGUggagguuGACCGGuaCGGCg -3'
miRNA:   3'- uGCCGUGGUGgACG-------UUGGCCuaGCCG- -5'
18094 5' -58.4 NC_004680.1 + 39403 0.66 0.580919
Target:  5'- cCGGCgaguuggucguugACCAUCUGC-ACCaGGG-CGGCc -3'
miRNA:   3'- uGCCG-------------UGGUGGACGuUGG-CCUaGCCG- -5'
18094 5' -58.4 NC_004680.1 + 17567 0.66 0.580919
Target:  5'- aACGGaCGCUGCaCUGCAAcgccgacugcuCCGGGUgaauaccCGGCu -3'
miRNA:   3'- -UGCC-GUGGUG-GACGUU-----------GGCCUA-------GCCG- -5'
18094 5' -58.4 NC_004680.1 + 15340 0.66 0.571383
Target:  5'- aACGGCugUGCCUG-AAUCGGAagccaccacgaCGGCc -3'
miRNA:   3'- -UGCCGugGUGGACgUUGGCCUa----------GCCG- -5'
18094 5' -58.4 NC_004680.1 + 13409 0.66 0.571383
Target:  5'- cGCGGCGaguCCAUUucgGgGACCGGccgCGGCa -3'
miRNA:   3'- -UGCCGU---GGUGGa--CgUUGGCCua-GCCG- -5'
18094 5' -58.4 NC_004680.1 + 59215 0.66 0.571383
Target:  5'- --uGCGCCGCCgcGUGAUCGGGguuguauguggUCGGCg -3'
miRNA:   3'- ugcCGUGGUGGa-CGUUGGCCU-----------AGCCG- -5'
18094 5' -58.4 NC_004680.1 + 13896 0.66 0.565046
Target:  5'- aACGGCAuCCGCaugagggugcaggGCAACUGGAUCa-- -3'
miRNA:   3'- -UGCCGU-GGUGga-----------CGUUGGCCUAGccg -5'
18094 5' -58.4 NC_004680.1 + 21754 0.66 0.560832
Target:  5'- aACGGUgaguGCCACCUcgucGCGGCCGaauaaGUgGGCu -3'
miRNA:   3'- -UGCCG----UGGUGGA----CGUUGGCc----UAgCCG- -5'
18094 5' -58.4 NC_004680.1 + 44213 0.66 0.560832
Target:  5'- cGCGcGCAUCGCaCUGU--CCGGGccuagCGGCa -3'
miRNA:   3'- -UGC-CGUGGUG-GACGuuGGCCUa----GCCG- -5'
18094 5' -58.4 NC_004680.1 + 53876 0.66 0.560832
Target:  5'- -gGGCugCACCUGCcucgguGCCGcacAUCuGGCc -3'
miRNA:   3'- ugCCGugGUGGACGu-----UGGCc--UAG-CCG- -5'
18094 5' -58.4 NC_004680.1 + 15605 0.66 0.550336
Target:  5'- uGCGGgcCACCAUCgGCGACguguccagcagUGGAUUGGUg -3'
miRNA:   3'- -UGCC--GUGGUGGaCGUUG-----------GCCUAGCCG- -5'
18094 5' -58.4 NC_004680.1 + 29149 0.66 0.550336
Target:  5'- uGCGGCGCCGCCggacacugacaGCAcugacACCcaAUCGGUg -3'
miRNA:   3'- -UGCCGUGGUGGa----------CGU-----UGGccUAGCCG- -5'
18094 5' -58.4 NC_004680.1 + 748 0.66 0.550336
Target:  5'- -gGGCACCGuuUG--GCUGGccGUCGGCg -3'
miRNA:   3'- ugCCGUGGUggACguUGGCC--UAGCCG- -5'
18094 5' -58.4 NC_004680.1 + 11808 0.66 0.550336
Target:  5'- -gGGCGCCGUCUGCAAcccCCGGGcagUCGccGCg -3'
miRNA:   3'- ugCCGUGGUGGACGUU---GGCCU---AGC--CG- -5'
18094 5' -58.4 NC_004680.1 + 17251 0.66 0.550336
Target:  5'- gUGGCGggACCUGCGGCgGGuucGUCGGa -3'
miRNA:   3'- uGCCGUggUGGACGUUGgCC---UAGCCg -5'
18094 5' -58.4 NC_004680.1 + 16663 0.66 0.550336
Target:  5'- cGCGGCGauccuCCAgUUGCGGCCGcaGggCGGUa -3'
miRNA:   3'- -UGCCGU-----GGUgGACGUUGGC--CuaGCCG- -5'
18094 5' -58.4 NC_004680.1 + 5627 0.66 0.549289
Target:  5'- -gGGCACCaucgggaACCUGCuggguGCuCGGAUCGuGg -3'
miRNA:   3'- ugCCGUGG-------UGGACGu----UG-GCCUAGC-Cg -5'
18094 5' -58.4 NC_004680.1 + 47748 0.66 0.539901
Target:  5'- uGauGCugCACgUGCGauccgGCgGGAUCGGUg -3'
miRNA:   3'- -UgcCGugGUGgACGU-----UGgCCUAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.