miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18094 5' -58.4 NC_004680.1 + 17447 0.67 0.529533
Target:  5'- uGCGGUGCCGUCUGagccggguauuCAcCCGGAgcagUCGGCg -3'
miRNA:   3'- -UGCCGUGGUGGAC-----------GUuGGCCU----AGCCG- -5'
18094 5' -58.4 NC_004680.1 + 10920 0.69 0.421513
Target:  5'- gACGGCgaggACCGCCUGUuccCCGG-UUGGg -3'
miRNA:   3'- -UGCCG----UGGUGGACGuu-GGCCuAGCCg -5'
18094 5' -58.4 NC_004680.1 + 12375 0.69 0.421513
Target:  5'- cGCGGguCCACU----GCCGGGUcCGGCu -3'
miRNA:   3'- -UGCCguGGUGGacguUGGCCUA-GCCG- -5'
18094 5' -58.4 NC_004680.1 + 23081 0.68 0.430795
Target:  5'- cUGGCGCCGCUgGCAcgACCGGggCGa- -3'
miRNA:   3'- uGCCGUGGUGGaCGU--UGGCCuaGCcg -5'
18094 5' -58.4 NC_004680.1 + 21575 0.68 0.440195
Target:  5'- aACGGCACCgcgcacagucaGCCgGUGACCGuuUCGaGCg -3'
miRNA:   3'- -UGCCGUGG-----------UGGaCGUUGGCcuAGC-CG- -5'
18094 5' -58.4 NC_004680.1 + 58785 0.67 0.477929
Target:  5'- uACGGCgACgACCcaaCAGCCcagacugaacuagGGAUCGGCa -3'
miRNA:   3'- -UGCCG-UGgUGGac-GUUGG-------------CCUAGCCG- -5'
18094 5' -58.4 NC_004680.1 + 28802 0.67 0.478918
Target:  5'- -aGGCACCGCUaccggagGCGAUCGcGAUCaccaaGGCa -3'
miRNA:   3'- ugCCGUGGUGGa------CGUUGGC-CUAG-----CCG- -5'
18094 5' -58.4 NC_004680.1 + 52968 0.67 0.509026
Target:  5'- -aGGCugUACCUggGCAGCCuGGAcugUGGUg -3'
miRNA:   3'- ugCCGugGUGGA--CGUUGG-CCUa--GCCG- -5'
18094 5' -58.4 NC_004680.1 + 34478 0.67 0.526437
Target:  5'- uCGGCGaugcugacgaucgcCCACgUGCAGCCGGGggagcUgGGUg -3'
miRNA:   3'- uGCCGU--------------GGUGgACGUUGGCCU-----AgCCG- -5'
18094 5' -58.4 NC_004680.1 + 12700 0.69 0.421513
Target:  5'- uACGGCgGCCAg--GUcGCCGcGAUCGGCg -3'
miRNA:   3'- -UGCCG-UGGUggaCGuUGGC-CUAGCCG- -5'
18094 5' -58.4 NC_004680.1 + 42651 0.69 0.420591
Target:  5'- gGCGGC-CCGCCUGCucgacGACggcgccuccuacaCGGAUgccgCGGCg -3'
miRNA:   3'- -UGCCGuGGUGGACG-----UUG-------------GCCUA----GCCG- -5'
18094 5' -58.4 NC_004680.1 + 12979 0.7 0.363407
Target:  5'- uCGcGUAUCACCUGCAaaaccaguacgucauGCCGGGagGGUa -3'
miRNA:   3'- uGC-CGUGGUGGACGU---------------UGGCCUagCCG- -5'
18094 5' -58.4 NC_004680.1 + 17210 0.72 0.26339
Target:  5'- gACGGUGCC-CCgguguggcGCAAUCGGAgCGGCu -3'
miRNA:   3'- -UGCCGUGGuGGa-------CGUUGGCCUaGCCG- -5'
18094 5' -58.4 NC_004680.1 + 15419 0.72 0.276772
Target:  5'- uCGGCACCGugcugcaagcCCUGUcGCgGGAUgGGCu -3'
miRNA:   3'- uGCCGUGGU----------GGACGuUGgCCUAgCCG- -5'
18094 5' -58.4 NC_004680.1 + 11066 0.71 0.283665
Target:  5'- gAUGGCAU--CCUGCuGCCGGG-CGGCc -3'
miRNA:   3'- -UGCCGUGguGGACGuUGGCCUaGCCG- -5'
18094 5' -58.4 NC_004680.1 + 19718 0.7 0.327872
Target:  5'- cACGGUacGCCACCUGgugGAgCGGGUaaCGGCg -3'
miRNA:   3'- -UGCCG--UGGUGGACg--UUgGCCUA--GCCG- -5'
18094 5' -58.4 NC_004680.1 + 29113 0.7 0.327872
Target:  5'- uCGGCGCggaaCGCCgcgGCAAccCCGGAaCGGCu -3'
miRNA:   3'- uGCCGUG----GUGGa--CGUU--GGCCUaGCCG- -5'
18094 5' -58.4 NC_004680.1 + 30797 0.7 0.327872
Target:  5'- aGCGG-AUCACCgGCGACCGGAU-GGa -3'
miRNA:   3'- -UGCCgUGGUGGaCGUUGGCCUAgCCg -5'
18094 5' -58.4 NC_004680.1 + 27825 0.7 0.351816
Target:  5'- gAUGGUugGCCGCagcucgGCGGCCGGA-CGGUg -3'
miRNA:   3'- -UGCCG--UGGUGga----CGUUGGCCUaGCCG- -5'
18094 5' -58.4 NC_004680.1 + 28225 0.7 0.360069
Target:  5'- uGCGGCACCGguguucCCUGg---UGGAUCGGCc -3'
miRNA:   3'- -UGCCGUGGU------GGACguugGCCUAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.