miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18095 5' -54.1 NC_004680.1 + 27817 0.65 0.834656
Target:  5'- gGAACCGcuucaccuucggcGGUucagguucggucUUGC-CGCCAGcCGCCc -3'
miRNA:   3'- gCUUGGC-------------CCA------------AACGuGCGGUCaGUGG- -5'
18095 5' -54.1 NC_004680.1 + 58743 0.66 0.826599
Target:  5'- aCGggUUGGGga-GC-CG-CGGUCGCCg -3'
miRNA:   3'- -GCuuGGCCCaaaCGuGCgGUCAGUGG- -5'
18095 5' -54.1 NC_004680.1 + 13775 0.66 0.80812
Target:  5'- gGAucauCCGGGUcgucccGCcaccuCGCCuGGUCACCa -3'
miRNA:   3'- gCUu---GGCCCAaa----CGu----GCGG-UCAGUGG- -5'
18095 5' -54.1 NC_004680.1 + 4743 0.66 0.80812
Target:  5'- uCGAuCCGGGacaGCGgGUC-GUCGCCg -3'
miRNA:   3'- -GCUuGGCCCaaaCGUgCGGuCAGUGG- -5'
18095 5' -54.1 NC_004680.1 + 1833 0.66 0.78891
Target:  5'- aCGAucGCCGcGUggGCGgGCCGGUUcCCg -3'
miRNA:   3'- -GCU--UGGCcCAaaCGUgCGGUCAGuGG- -5'
18095 5' -54.1 NC_004680.1 + 9373 0.67 0.779057
Target:  5'- uGAACCGGGcgaucucgUUGUACGUUuc-CGCCg -3'
miRNA:   3'- gCUUGGCCCa-------AACGUGCGGucaGUGG- -5'
18095 5' -54.1 NC_004680.1 + 41750 0.67 0.758911
Target:  5'- aGAucGCgCGGGa----ACGCCAGUCGCUg -3'
miRNA:   3'- gCU--UG-GCCCaaacgUGCGGUCAGUGG- -5'
18095 5' -54.1 NC_004680.1 + 24292 0.67 0.738251
Target:  5'- cCGGGaaGGGUggUGCccauccacAUGCCGGUCGCg -3'
miRNA:   3'- -GCUUggCCCAa-ACG--------UGCGGUCAGUGg -5'
18095 5' -54.1 NC_004680.1 + 27455 0.68 0.695752
Target:  5'- --cGCCGGGUcccGCGCuGCCuGGUCGCg -3'
miRNA:   3'- gcuUGGCCCAaa-CGUG-CGG-UCAGUGg -5'
18095 5' -54.1 NC_004680.1 + 14357 0.68 0.695752
Target:  5'- cCGAACaGGGUg-GCAUcccaauacaucgGCUGGUCACCa -3'
miRNA:   3'- -GCUUGgCCCAaaCGUG------------CGGUCAGUGG- -5'
18095 5' -54.1 NC_004680.1 + 12496 0.68 0.695752
Target:  5'- gGGGCUGGGUUagGCGC-CCAcgCACCa -3'
miRNA:   3'- gCUUGGCCCAAa-CGUGcGGUcaGUGG- -5'
18095 5' -54.1 NC_004680.1 + 12709 0.68 0.684947
Target:  5'- aGcGCCGGGUgccauCGCGuCCAG-CGCCa -3'
miRNA:   3'- gCuUGGCCCAaac--GUGC-GGUCaGUGG- -5'
18095 5' -54.1 NC_004680.1 + 18195 0.68 0.684947
Target:  5'- -cAACCGGaucgGCGCGCCGG-UACCc -3'
miRNA:   3'- gcUUGGCCcaaaCGUGCGGUCaGUGG- -5'
18095 5' -54.1 NC_004680.1 + 14128 0.69 0.663198
Target:  5'- uCGGggcAUCGGGUUugguaUGCAgGCCGGUgGCg -3'
miRNA:   3'- -GCU---UGGCCCAA-----ACGUgCGGUCAgUGg -5'
18095 5' -54.1 NC_004680.1 + 11105 0.69 0.641334
Target:  5'- gGGGCCGGGgggccgGCugGCCcgauggGGagGCCg -3'
miRNA:   3'- gCUUGGCCCaaa---CGugCGG------UCagUGG- -5'
18095 5' -54.1 NC_004680.1 + 50135 0.69 0.619437
Target:  5'- aCGAAUCGGGUUgcaggcucugGCACGcCCAGcUCGa- -3'
miRNA:   3'- -GCUUGGCCCAAa---------CGUGC-GGUC-AGUgg -5'
18095 5' -54.1 NC_004680.1 + 12460 0.7 0.6085
Target:  5'- gGAGCCGGacccgGCaguggacccGCGCCAG-CACCa -3'
miRNA:   3'- gCUUGGCCcaaa-CG---------UGCGGUCaGUGG- -5'
18095 5' -54.1 NC_004680.1 + 30030 0.71 0.522435
Target:  5'- -cAAUCGuGGUgcgcgGCAUGCgGGUCACCg -3'
miRNA:   3'- gcUUGGC-CCAaa---CGUGCGgUCAGUGG- -5'
18095 5' -54.1 NC_004680.1 + 50466 0.72 0.491311
Target:  5'- uGAGCgGGGagUUGCGCGCaguacUCACCg -3'
miRNA:   3'- gCUUGgCCCa-AACGUGCGguc--AGUGG- -5'
18095 5' -54.1 NC_004680.1 + 19513 0.72 0.481127
Target:  5'- uGGcCCGGGUgacgGCGcCGCCGGUgguaaCACCa -3'
miRNA:   3'- gCUuGGCCCAaa--CGU-GCGGUCA-----GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.