miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18096 5' -58.3 NC_004680.1 + 26877 0.66 0.535928
Target:  5'- ---cGGUCauCGcCGAUGCCgGUGCCGACc -3'
miRNA:   3'- uuguCCAG--GC-GCUACGGgCGUGGUUG- -5'
18096 5' -58.3 NC_004680.1 + 51666 0.66 0.535928
Target:  5'- --aAGGUCCGCgcauaccucgguGAUGCacgaaugaccgCCGCAUCGGCu -3'
miRNA:   3'- uugUCCAGGCG------------CUACG-----------GGCGUGGUUG- -5'
18096 5' -58.3 NC_004680.1 + 29102 0.66 0.525413
Target:  5'- -gUAGGUcaaCCGC---GCCCGCGCCGAg -3'
miRNA:   3'- uuGUCCA---GGCGcuaCGGGCGUGGUUg -5'
18096 5' -58.3 NC_004680.1 + 27411 0.66 0.514977
Target:  5'- ---uGGUCCGUGGgcaacGCCaacaGCAUCAGCa -3'
miRNA:   3'- uuguCCAGGCGCUa----CGGg---CGUGGUUG- -5'
18096 5' -58.3 NC_004680.1 + 45975 0.66 0.514977
Target:  5'- uGGCAGGUCCcaugaucacCGuUGCuuGCGCCGAa -3'
miRNA:   3'- -UUGUCCAGGc--------GCuACGggCGUGGUUg -5'
18096 5' -58.3 NC_004680.1 + 36772 0.66 0.504626
Target:  5'- cACGGGUCaCGCGAcUGCUgaUGCGCUcaAGCg -3'
miRNA:   3'- uUGUCCAG-GCGCU-ACGG--GCGUGG--UUG- -5'
18096 5' -58.3 NC_004680.1 + 7870 0.67 0.454335
Target:  5'- gAACAGGUCauCGCGAagcuUGCCguccUGCGCgAACg -3'
miRNA:   3'- -UUGUCCAG--GCGCU----ACGG----GCGUGgUUG- -5'
18096 5' -58.3 NC_004680.1 + 1948 0.67 0.444603
Target:  5'- cGACuGGUgaCGCGGUGCUgGCuGCCAAUg -3'
miRNA:   3'- -UUGuCCAg-GCGCUACGGgCG-UGGUUG- -5'
18096 5' -58.3 NC_004680.1 + 29183 0.67 0.444603
Target:  5'- gAAUcGGUgCGCGAagcaauggaUGCCgCGUACCAGCc -3'
miRNA:   3'- -UUGuCCAgGCGCU---------ACGG-GCGUGGUUG- -5'
18096 5' -58.3 NC_004680.1 + 24267 0.68 0.387905
Target:  5'- uGCcGGU-CGCGGUGCCggacuuuUGCACCGACu -3'
miRNA:   3'- uUGuCCAgGCGCUACGG-------GCGUGGUUG- -5'
18096 5' -58.3 NC_004680.1 + 42141 0.69 0.37995
Target:  5'- gAGCAGGUCUGCGcauacGUGCCCaugaacuCGCCGccGCa -3'
miRNA:   3'- -UUGUCCAGGCGC-----UACGGGc------GUGGU--UG- -5'
18096 5' -58.3 NC_004680.1 + 38863 0.69 0.34924
Target:  5'- --aGGGUCCcggcGCGGggggcgggggaaccaUGCCCGCGCCGGg -3'
miRNA:   3'- uugUCCAGG----CGCU---------------ACGGGCGUGGUUg -5'
18096 5' -58.3 NC_004680.1 + 29199 0.69 0.337785
Target:  5'- -cCGGGguugCCGCGgcGuUCCGCGCCGAUa -3'
miRNA:   3'- uuGUCCa---GGCGCuaC-GGGCGUGGUUG- -5'
18096 5' -58.3 NC_004680.1 + 408 0.7 0.314167
Target:  5'- uACGGGacgaaUCCGCug-GCCCGuCGCCGACu -3'
miRNA:   3'- uUGUCC-----AGGCGcuaCGGGC-GUGGUUG- -5'
18096 5' -58.3 NC_004680.1 + 52683 0.71 0.284652
Target:  5'- gAGCGuGUCCGaugacuGAUGUCCGCACCAGg -3'
miRNA:   3'- -UUGUcCAGGCg-----CUACGGGCGUGGUUg -5'
18096 5' -58.3 NC_004680.1 + 4290 0.71 0.270736
Target:  5'- cGC-GGUCUGCGAUGUCCGCgaacGCCuuCa -3'
miRNA:   3'- uUGuCCAGGCGCUACGGGCG----UGGuuG- -5'
18096 5' -58.3 NC_004680.1 + 12728 0.71 0.263985
Target:  5'- ---cGGUCUGCGcgGCCUG-ACCAGCg -3'
miRNA:   3'- uuguCCAGGCGCuaCGGGCgUGGUUG- -5'
18096 5' -58.3 NC_004680.1 + 3308 0.73 0.203821
Target:  5'- cGACuGGUUCGCGcUGUCCGgCAUCAGCa -3'
miRNA:   3'- -UUGuCCAGGCGCuACGGGC-GUGGUUG- -5'
18096 5' -58.3 NC_004680.1 + 51807 0.74 0.178445
Target:  5'- uGCGGG-CCGCGGUGUUCGCaauaGCCAAUg -3'
miRNA:   3'- uUGUCCaGGCGCUACGGGCG----UGGUUG- -5'
18096 5' -58.3 NC_004680.1 + 5706 0.77 0.115179
Target:  5'- cAGCAGGUucCCGaUGGUGCCCGCccgcagACCAGCa -3'
miRNA:   3'- -UUGUCCA--GGC-GCUACGGGCG------UGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.