miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18097 3' -59.9 NC_004680.1 + 44661 0.66 0.505592
Target:  5'- gACGugGCCGgGauaggacaCCAGGG-CGUCGAUc -3'
miRNA:   3'- -UGCugUGGUgCg-------GGUCCCcGUAGCUG- -5'
18097 3' -59.9 NC_004680.1 + 58471 0.66 0.495556
Target:  5'- --uACACCugGCCCAGccuCGUCGACc -3'
miRNA:   3'- ugcUGUGGugCGGGUCcccGUAGCUG- -5'
18097 3' -59.9 NC_004680.1 + 23478 0.66 0.475764
Target:  5'- -gGAgAUCACuGCCgAGGGGCAggcccCGGCc -3'
miRNA:   3'- ugCUgUGGUG-CGGgUCCCCGUa----GCUG- -5'
18097 3' -59.9 NC_004680.1 + 58791 0.66 0.475764
Target:  5'- gACGAC-CCAacaGCCCAGacugaacuaGGG-AUCGGCa -3'
miRNA:   3'- -UGCUGuGGUg--CGGGUC---------CCCgUAGCUG- -5'
18097 3' -59.9 NC_004680.1 + 58307 0.66 0.456373
Target:  5'- cCGACACCACaGCCCAcuGGCucaccugcCGGCg -3'
miRNA:   3'- uGCUGUGGUG-CGGGUccCCGua------GCUG- -5'
18097 3' -59.9 NC_004680.1 + 31405 0.67 0.446838
Target:  5'- aGCGugGCCGCGUggAGGGaGCAcggucacuaguUCGGCc -3'
miRNA:   3'- -UGCugUGGUGCGggUCCC-CGU-----------AGCUG- -5'
18097 3' -59.9 NC_004680.1 + 33564 0.67 0.437415
Target:  5'- -gGGCGCC-CGCCguGGGGaacuccUCGGCc -3'
miRNA:   3'- ugCUGUGGuGCGGguCCCCgu----AGCUG- -5'
18097 3' -59.9 NC_004680.1 + 11899 0.67 0.428107
Target:  5'- cGCGGCGac-UGCCCGGGGGUugcaGACg -3'
miRNA:   3'- -UGCUGUgguGCGGGUCCCCGuag-CUG- -5'
18097 3' -59.9 NC_004680.1 + 14097 0.67 0.408948
Target:  5'- cCGGCACCGguagugaacuCgGCCCGgacuaucGGGGCAUCGGg -3'
miRNA:   3'- uGCUGUGGU----------G-CGGGU-------CCCCGUAGCUg -5'
18097 3' -59.9 NC_004680.1 + 56265 0.68 0.349919
Target:  5'- cCGACACC-CGCuCCAuGaGCAUCGGCa -3'
miRNA:   3'- uGCUGUGGuGCG-GGUcCcCGUAGCUG- -5'
18097 3' -59.9 NC_004680.1 + 50438 0.69 0.326214
Target:  5'- uGCGAUACCaAUGCCCAuacaGGGCggCGAg -3'
miRNA:   3'- -UGCUGUGG-UGCGGGUc---CCCGuaGCUg -5'
18097 3' -59.9 NC_004680.1 + 50804 0.7 0.289401
Target:  5'- uACGGCggguggauucguACCAgGCCgCAGGaugaGGCGUCGACc -3'
miRNA:   3'- -UGCUG------------UGGUgCGG-GUCC----CCGUAGCUG- -5'
18097 3' -59.9 NC_004680.1 + 26044 0.7 0.282441
Target:  5'- cGCGGCGguCUACGCgCUAGGGGCGaucCGAUg -3'
miRNA:   3'- -UGCUGU--GGUGCG-GGUCCCCGUa--GCUG- -5'
18097 3' -59.9 NC_004680.1 + 57638 0.71 0.237408
Target:  5'- aACGGCACCACcaaaCCC-GGGGCGgaGACa -3'
miRNA:   3'- -UGCUGUGGUGc---GGGuCCCCGUagCUG- -5'
18097 3' -59.9 NC_004680.1 + 18920 1.08 0.000439
Target:  5'- cACGACACCACGCCCAGGGGCAUCGACu -3'
miRNA:   3'- -UGCUGUGGUGCGGGUCCCCGUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.